Serka-M / Digester-MultiSequencingLinks
Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
☆21Updated 2 years ago
Alternatives and similar repositories for Digester-MultiSequencing
Users that are interested in Digester-MultiSequencing are comparing it to the libraries listed below
Sorting:
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Gene-flank analysis tool☆30Updated 9 months ago
- Graph-based assembly phasing☆87Updated 5 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- Microbiome classification pipeline☆65Updated 4 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆53Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year