Serka-M / Digester-MultiSequencingLinks
Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
☆21Updated 3 years ago
Alternatives and similar repositories for Digester-MultiSequencing
Users that are interested in Digester-MultiSequencing are comparing it to the libraries listed below
Sorting:
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆15Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated 2 weeks ago
- Gene-flank analysis tool☆37Updated last year
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 7 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 10 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- ☆42Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- ☆53Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago