Serka-M / Digester-MultiSequencing
Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
☆21Updated 2 years ago
Alternatives and similar repositories for Digester-MultiSequencing:
Users that are interested in Digester-MultiSequencing are comparing it to the libraries listed below
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Gene-flank analysis tool☆27Updated 4 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 4 months ago
- whole genome MLST analysis☆42Updated last month
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated last week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Quality control plotting for long reads☆10Updated 11 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year