Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
☆10Nov 3, 2021Updated 4 years ago
Alternatives and similar repositories for GenePlexus
Users that are interested in GenePlexus are comparing it to the libraries listed below
Sorting:
- Courses & workshops led by members of the Krishnan Lab.☆23Sep 7, 2025Updated 5 months ago
- reverse gene expression score☆15Sep 8, 2023Updated 2 years ago
- ☆11Mar 1, 2025Updated last year
- Workshop: RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR☆13Aug 23, 2021Updated 4 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 3 years ago
- RCSM(Recommended Connectivity-map Scoring Methods)☆17Aug 2, 2019Updated 6 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 2 years ago
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 2 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Jan 20, 2026Updated last month
- Network-based Drug Repurposing for Human Coronavirus☆41Feb 4, 2020Updated 6 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Aug 21, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- Connect the dots in networks.☆20Aug 28, 2020Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 6 years ago
- Disease pathways in the human interactome☆23Mar 20, 2018Updated 7 years ago
- A project to capture biological pathway data from academic papers☆29Mar 24, 2025Updated 11 months ago
- L1000 peak deconvolution based on Bayesian analysis☆28Oct 10, 2021Updated 4 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆28Mar 8, 2021Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- ☆57Jul 29, 2019Updated 6 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 3 years ago
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 3 months ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Aug 30, 2022Updated 3 years ago
- Computational Analysis of Novel Drug Opportunities☆40Jan 9, 2026Updated last month
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- Deep Network Fusion (deepNF)☆32May 4, 2020Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Nov 5, 2025Updated 3 months ago
- ☆10May 31, 2022Updated 3 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- ☆10Aug 29, 2023Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆37Apr 9, 2020Updated 5 years ago
- PGCN: Disease gene prioritization by disease and gene embedding through GCN☆79Apr 1, 2024Updated last year
- PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis☆37Dec 28, 2022Updated 3 years ago