krishnanlab / GenePlexus
Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
☆10Updated 3 years ago
Alternatives and similar repositories for GenePlexus
Users that are interested in GenePlexus are comparing it to the libraries listed below
Sorting:
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Updated 3 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆63Updated 4 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆12Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆14Updated 3 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Processing workflow for COVID-19 single cell data☆17Updated 3 years ago
- ☆33Updated 2 years ago
- ☆9Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆26Updated last year
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆29Updated 2 years ago
- Time-Course Multi-Omics data integration☆24Updated last year
- ☆11Updated 4 years ago
- ☆18Updated last year
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- ☆22Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year