koszullab / hicstuffLinks
Simple library/pipeline to generate and handle Hi-C data.
☆37Updated 6 months ago
Alternatives and similar repositories for hicstuff
Users that are interested in hicstuff are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- A pipeline for isoseq☆23Updated 6 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆33Updated 6 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- ☆40Updated 3 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆20Updated this week
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- new repo☆28Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- ☆23Updated 2 years ago
- ☆32Updated last year
- ☆29Updated 4 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- A battery of methylation tools for PacBio HiFi reads☆36Updated 2 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated last year
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 10 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago