koszullab / hicstuff
Simple library/pipeline to generate and handle Hi-C data.
☆37Updated 4 months ago
Alternatives and similar repositories for hicstuff:
Users that are interested in hicstuff are comparing it to the libraries listed below
- A Nextflow workflow to generate lift over files for any pair of genomes☆61Updated last month
- processing 10x genomics reads☆25Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆33Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 10 months ago
- ☆29Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- new repo☆28Updated 3 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 8 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Error correction of ONT transcript reads☆59Updated last year
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated last month
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- ☆37Updated last month
- python plotly Circos from VCF☆33Updated 9 months ago
- ☆33Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 7 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 10 months ago
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 11 months ago
- ☆23Updated 2 years ago