koszullab / hicstuffLinks
Simple library/pipeline to generate and handle Hi-C data.
☆39Updated last year
Alternatives and similar repositories for hicstuff
Users that are interested in hicstuff are comparing it to the libraries listed below
Sorting:
- new repo☆28Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 7 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- ☆49Updated 2 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- ☆38Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 4 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 5 months ago
- ☆35Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- Scripting analyses of genomes in Ensembl Plants☆42Updated last month
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 11 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 6 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 weeks ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆28Updated 2 months ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated 2 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆25Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- ☆78Updated 5 years ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Efficient merging of structural variants from multiple SV callers and samples☆32Updated this week
- python plotly Circos from VCF☆40Updated last year