koszullab / hicstuffLinks
Simple library/pipeline to generate and handle Hi-C data.
☆39Updated 10 months ago
Alternatives and similar repositories for hicstuff
Users that are interested in hicstuff are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- ☆34Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated this week
- Error correction of ONT transcript reads☆58Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 7 months ago
- ☆45Updated 7 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆25Updated 3 months ago
- ☆35Updated last year
- ☆13Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated this week
- new repo☆28Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- ☆38Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 5 months ago
- Variant annotation and merging pipeline☆39Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- ☆30Updated 4 years ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated 3 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆24Updated 2 months ago
- Structural variant merging tool☆55Updated last year