agalitsyna / fontankaLinks
Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling fountains from cool Hi-C files.
☆12Updated 2 years ago
Alternatives and similar repositories for fontanka
Users that are interested in fontanka are comparing it to the libraries listed below
Sorting:
- Red-C data processing☆15Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆32Updated this week
- A toolkit for analyzing architectural stripes☆20Updated 8 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 3 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- ☆22Updated 2 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- ☆21Updated 4 years ago
- Processing and plotting tools for genomics data☆21Updated 2 weeks ago
- A Python implementation for BH-FDR and HiCCUPS☆50Updated 3 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ☆36Updated 5 years ago
- 4C-seq processing pipeline☆24Updated 4 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 weeks ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated this week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆36Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago