agalitsyna / fontankaLinks
Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling fountains from cool Hi-C files.
☆12Updated 2 years ago
Alternatives and similar repositories for fontanka
Users that are interested in fontanka are comparing it to the libraries listed below
Sorting:
- Red-C data processing☆15Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆38Updated this week
- A toolkit for analyzing architectural stripes☆20Updated 9 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated this week