MWSchmid / HiCdatLinks
Hi-C data analysis tool
☆13Updated 8 years ago
Alternatives and similar repositories for HiCdat
Users that are interested in HiCdat are comparing it to the libraries listed below
Sorting:
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- ☆37Updated 6 years ago
- ☆22Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- ☆17Updated 5 years ago
- Genomic Association Tester☆34Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- processing 10x genomics reads☆26Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- ☆17Updated 5 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- Long read to rMATS☆32Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ☆38Updated 4 years ago
- ☆23Updated 11 months ago
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago
- BISulfite-seq CUI Toolkit☆24Updated 2 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- ☆38Updated 2 years ago