LooseLab / read_until_api_v2
Python3 Read Until API implementation
☆11Updated 4 years ago
Related projects: ⓘ
- Hierarchical clustering of cgMLST☆10Updated 10 months ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆25Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆34Updated 9 months ago
- Influenza genome analysis Nextflow workflow☆14Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆23Updated this week
- reference-based long read assemblies of bacterial genomes☆46Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Recombination-free trees☆55Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆51Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆16Updated last year
- Automated strain separation of low-complexity metagenomes☆47Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆25Updated last week
- Gene-flank analysis tool☆25Updated 4 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆34Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆34Updated last year
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- whole genome MLST analysis☆35Updated 4 months ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆14Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated last year
- Find Unique genomic Regions☆29Updated 2 weeks ago
- A program for detection of tRNA genes☆55Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆45Updated last month