Tian-Dechao / diffDomain
DiffDomain is a statistically sound method for detecting differential TADs between conditions
☆16Updated 4 months ago
Alternatives and similar repositories for diffDomain:
Users that are interested in diffDomain are comparing it to the libraries listed below
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- ☆24Updated 3 years ago
- ☆11Updated 5 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆17Updated 7 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 7 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated last month
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- ☆21Updated last year
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last week
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated last year
- single-cell clustering based on alternative splicing landscapes☆19Updated 11 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- ☆32Updated 8 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆18Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- Statistically Significant loops from HiChIP data☆40Updated 10 months ago
- an efficient Hi-C data processing pipeline☆15Updated 11 months ago
- Micro-C QC and data analysis☆15Updated last year
- Scripts used for the ACT paper☆12Updated 3 years ago
- ☆36Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago