Command line tool to plot genomic coverage from a BAM file
☆14Apr 5, 2023Updated 2 years ago
Alternatives and similar repositories for tinycov
Users that are interested in tinycov are comparing it to the libraries listed below
Sorting:
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- ☆10Jun 9, 2020Updated 5 years ago
- Analyzing Hi-C data in R with HiCExperiment objects☆15Mar 18, 2025Updated 11 months ago
- ☆10Mar 4, 2025Updated 11 months ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 9 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Nov 6, 2025Updated 3 months ago
- ☆35Nov 1, 2021Updated 4 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆17Mar 18, 2023Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Feb 13, 2026Updated 2 weeks ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Dec 18, 2022Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆17Aug 12, 2025Updated 6 months ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- Construct a Physical Map from Linked Reads☆18Apr 5, 2024Updated last year
- ☆16Jan 15, 2025Updated last year
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction☆17Mar 23, 2018Updated 7 years ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 4 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago