cmdoret / tinycovLinks
Command line tool to plot genomic coverage from a BAM file
☆14Updated 2 years ago
Alternatives and similar repositories for tinycov
Users that are interested in tinycov are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆31Updated 6 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- ULTRA Locates Tandemly Repetitive Areas☆39Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- SV genotyper for long reads with a variation graph☆15Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆19Updated last year
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- Draw a dot plot from a paf alignment☆35Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- ☆32Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- ☆39Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- TD2☆29Updated 3 weeks ago
- ☆26Updated 10 months ago
- SV calling for diploid assemblies☆30Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago