cmdoret / tinycovLinks
Command line tool to plot genomic coverage from a BAM file
☆14Updated 2 years ago
Alternatives and similar repositories for tinycov
Users that are interested in tinycov are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆29Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆32Updated last year
- ☆31Updated 6 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- ☆19Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- ☆26Updated 10 months ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- A battery of methylation tools for PacBio HiFi reads☆44Updated 2 weeks ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- SV genotyper for long reads with a variation graph☆15Updated 4 months ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- Consensus genome annotation using OMA☆29Updated 5 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Transposable Elements MOvement detection using LOng reads☆25Updated 4 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- TD2☆27Updated 2 weeks ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago