cmdoret / tinycov

Related projects: ⓘ

• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆53Updated last week
• vgteam / sv-genotyping-paper
  ☆31Updated 4 years ago
• farhangus / Sniffles2_plot
  ☆23Updated last month
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆27Updated 2 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated 11 months ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆11Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆21Updated 2 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆18Updated last month
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• maickrau / ribotin
  ☆29Updated 3 weeks ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆28Updated 3 years ago
• daewoooo / SVbyEye
  ☆51Updated this week
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆18Updated last week
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆19Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 7 months ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆19Updated 3 months ago
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 4 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆29Updated last week
• vgteam / giraffe-sv-paper
  ☆39Updated 4 months ago
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated 4 months ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 2 years ago
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 5 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆59Updated 4 years ago
• jessicawleigh / popart
  General purpose population genetics software
  ☆12Updated 5 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆31Updated 2 years ago