Command line tool to plot genomic coverage from a BAM file
☆14Apr 5, 2023Updated 3 years ago
Alternatives and similar repositories for tinycov
Users that are interested in tinycov are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Apr 29, 2026Updated 4 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆21Dec 18, 2022Updated 3 years ago
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- ☆11Mar 4, 2025Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆42Updated this week
- ☆15Aug 22, 2023Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 10 months ago
- ☆10Jun 9, 2020Updated 6 years ago
- Importing and manipulating Hi-C data in R☆12Apr 29, 2026Updated 4 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- just get your chrom sizes☆17Mar 17, 2026Updated 6 months ago
- Workflow to identify the centromere dip regions (CDR) from methyl BAMs☆16Jun 4, 2025Updated last year
- ☆13Feb 2, 2026Updated 7 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 3 years ago
- ☆29Aug 18, 2026Updated last month
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Jul 30, 2026Updated last month
- Structural variant merging tool☆57Aug 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆18Jul 26, 2026Updated last month
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif☆10Aug 13, 2025Updated last year
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Updated this week
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- ☆13May 27, 2025Updated last year
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction☆18Mar 23, 2018Updated 8 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆30Sep 21, 2024Updated last year
- Construct a Physical Map from Linked Reads☆20Apr 1, 2026Updated 5 months ago
- B73Ab10 genome assembly methods☆17Jan 21, 2022Updated 4 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year