dvdylus / read2treeLinks
☆20Updated 3 years ago
Alternatives and similar repositories for read2tree
Users that are interested in read2tree are comparing it to the libraries listed below
Sorting:
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 10 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆41Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 11 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆41Updated 5 months ago
- ☆33Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- Linear-time de novo Long Read Assembler☆41Updated last week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- A tool for recovering synteny blocks from multiple alignment☆31Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆33Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆26Updated 4 years ago
- ☆28Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago