Alternatives and similar repositories for MSAplot:

Users that are interested in MSAplot are comparing it to the libraries listed below

• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆45Updated this week
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆20Updated 8 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆20Updated 4 months ago
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆19Updated last week
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆25Updated last year
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆43Updated this week
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆28Updated 3 weeks ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 3 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆50Updated 8 months ago
• seqeralabs / nf-chai
  POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
  ☆10Updated this week
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆12Updated 5 years ago
• CuiMiao-HIT / miniSNV
  ☆18Updated last month
• epi2me-labs / wf-clone-validation
  ☆28Updated this week
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆30Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆81Updated 2 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆18Updated 2 months ago
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆14Updated 3 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆18Updated 6 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆16Updated 3 weeks ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆53Updated 8 months ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• DNKonanov / Snapper
  snapper
  ☆14Updated 6 months ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 5 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆30Updated 3 weeks ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated last year
• dvdylus / read2tree
  ☆20Updated 2 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆30Updated last week