Plot multiple sequence alignment (MSA)
☆16Sep 23, 2024Updated last year
Alternatives and similar repositories for MSAplot
Users that are interested in MSAplot are comparing it to the libraries listed below
Sorting:
- ☆12Oct 13, 2021Updated 4 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 2 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 3 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 2 years ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated 9 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Nov 14, 2025Updated 3 months ago
- ☆12Dec 12, 2014Updated 11 years ago
- Noise-Cancelling Repeat Finder☆27Apr 11, 2023Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- ☆16Aug 8, 2025Updated 6 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 4 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- ☆16Feb 10, 2026Updated 2 weeks ago
- ☆62Sep 15, 2025Updated 5 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆19Updated this week
- snapper☆13Jul 8, 2024Updated last year
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jan 16, 2025Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated last month
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆15Apr 2, 2024Updated last year
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- Easy genomic regions for short-read variant calling☆45Sep 10, 2025Updated 5 months ago