GeneExt - Gene extension for improved scRNA-seq data counting
☆17Feb 20, 2026Updated last month
Alternatives and similar repositories for GeneExt
Users that are interested in GeneExt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A robust Python tool for the annotation of 3’ UTRs☆23Mar 4, 2026Updated 2 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆37Jul 23, 2025Updated 8 months ago
- Repository with NGSchool2022 materials☆14Sep 19, 2022Updated 3 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 6 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- MGI sequence platform data multiplexing tool☆12Sep 11, 2019Updated 6 years ago
- ☆16Apr 29, 2020Updated 5 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 6 years ago
- A git prompt for bash☆16Feb 19, 2026Updated last month
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 8 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Jun 6, 2024Updated last year
- Segmentation-free Analysis of In Situ Capture data☆14Jan 5, 2026Updated 2 months ago
- oxford dot plots☆166Feb 17, 2026Updated last month
- ☆14Oct 14, 2023Updated 2 years ago
- ☆20Apr 13, 2022Updated 3 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- A toolset to analyze genomic footprinting data☆20Dec 5, 2025Updated 3 months ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆12Dec 7, 2022Updated 3 years ago
- Nail is an Alignment Inference tooL☆54Updated this week
- ☆11Oct 21, 2025Updated 5 months ago
- ☆15Jun 13, 2025Updated 9 months ago
- ☆13Nov 3, 2023Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Nov 14, 2022Updated 3 years ago
- Biwhitened PCA☆14Updated this week
- R package for the analysis of OK-Seq data to study DNA replication fork directionality: from count matrices, RFD calculation to inititati…☆12Feb 8, 2023Updated 3 years ago
- R package for distance- and density-based outlier detection☆12May 28, 2019Updated 6 years ago
- ☆11Mar 12, 2026Updated last week
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- Cross-correlation coefficients in Python☆12Sep 22, 2017Updated 8 years ago
- Drug-disease proximity based therapeutic effect screening and analysis☆21Sep 8, 2017Updated 8 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 4 months ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Jan 30, 2023Updated 3 years ago
- ☆19Jun 26, 2021Updated 4 years ago
- Fresh new playthroughs!☆28Feb 2, 2023Updated 3 years ago
- ☆78Jun 2, 2025Updated 9 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year