devillemereuil / bayescenvLinks
BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
☆19Updated 7 years ago
Alternatives and similar repositories for bayescenv
Users that are interested in bayescenv are comparing it to the libraries listed below
Sorting:
- ☆30Updated last month
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆17Updated 9 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆13Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- A package for population structure inference from RAD-seq data☆31Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- machine learning applications for dadi☆15Updated 4 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- An R package to detect selection in biological pathways☆14Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- ☆11Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 3 months ago