Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
☆24Sep 3, 2014Updated 11 years ago
Alternatives and similar repositories for MicrobeDB
Users that are interested in MicrobeDB are comparing it to the libraries listed below
Sorting:
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- Tools for querying and analysis of genomic data☆27Oct 26, 2025Updated 4 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Prototype of the HealthOS ventilation system☆14Mar 27, 2020Updated 5 years ago
- R functions underlying OmicsNet☆20Feb 10, 2026Updated last month
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 4 years ago
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.☆16Jan 4, 2023Updated 3 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Various scripts and supporting files used in building the Bio-Linux ISO☆11Sep 5, 2017Updated 8 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- ☆20Apr 13, 2022Updated 3 years ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated 2 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆216Jul 1, 2025Updated 8 months ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with inform…☆29Nov 9, 2017Updated 8 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Phylogenetic placement and downstream analysis☆89Jan 28, 2026Updated last month
- ☆12Jan 29, 2020Updated 6 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Search, download, and prepare brain atlas data.☆17Mar 10, 2023Updated 3 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago