mlangill / MicrobeDBLinks
Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
☆24Updated 11 years ago
Alternatives and similar repositories for MicrobeDB
Users that are interested in MicrobeDB are comparing it to the libraries listed below
Sorting:
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- ☆12Updated 11 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- ☆11Updated 11 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- ☆26Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago