mlangill / MicrobeDBLinks
Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
☆24Updated 11 years ago
Alternatives and similar repositories for MicrobeDB
Users that are interested in MicrobeDB are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- ☆26Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated last week
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Read contamination removal☆25Updated last year
- transposable element typing pipeline☆19Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 4 months ago
- ☆12Updated 10 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- genomic alignment similarity search tool☆18Updated 8 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20Updated 7 months ago
- HyPhy tutorials☆11Updated 7 years ago
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Updated 3 years ago