ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
☆24Jan 28, 2025Updated last year
Alternatives and similar repositories for ModelPolisher
Users that are interested in ModelPolisher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The BiGG Models website server☆93Nov 7, 2019Updated 6 years ago
- refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).☆22Updated this week
- A collection of M models downloaded from published studies☆18Feb 18, 2016Updated 10 years ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆21Oct 8, 2024Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- cy3sbml: SBML for Cytoscape 3☆16Updated this week
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆22Jun 26, 2023Updated 3 years ago
- The consensus GEM for Saccharomyces cerevisiae☆137Updated this week
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 9 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆17Oct 23, 2026Updated 2 weeks ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆59Updated this week
- Python utilities for SBML☆43Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Computational method for Comparative ReConstruction of genome-scale metabolic networks☆22Mar 23, 2018Updated 8 years ago
- High level functionality to support and simplify metabolomics data annotation.☆21Aug 5, 2026Updated 3 months ago
- D3.js based visualizations of cobrapy metabolic models☆56Mar 10, 2020Updated 6 years ago
- Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017☆12Dec 27, 2017Updated 8 years ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Feb 29, 2016Updated 10 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆596Updated this week
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- CarveMe: genome-scale metabolic model reconstruction☆224Sep 12, 2025Updated last year
- Toolbox for including enzyme constraints on a genome-scale model. This repository holds GECKO 3.x; GECKO 4 is developed in CompMetEng/GEC…☆95Oct 16, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R Interface to the Metabolights REST API☆12Jun 10, 2026Updated 4 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Oct 29, 2019Updated 7 years ago
- Python package for working with PEtab files☆18Oct 26, 2026Updated last week
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- ☆16Mar 15, 2026Updated 7 months ago
- DeepECtransformer☆33Oct 20, 2023Updated 3 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the networ…☆14Mar 20, 2024Updated 2 years ago
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 7 years ago
- Genome browser for thousands of representative bacteria and archaea☆12Sep 8, 2026Updated last month
- Genome-scale model of Yarrowia lipolytica.☆13Jul 8, 2026Updated 3 months ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 4 years ago
- Description Materials for Spring 2020 Applied Genomics Course☆16Apr 22, 2020Updated 6 years ago
- Repository of tutorials for The COBRA Toolbox☆26Aug 24, 2026Updated 2 months ago