draeger-lab / ModelPolisherLinks
ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
☆23Updated 5 months ago
Alternatives and similar repositories for ModelPolisher
Users that are interested in ModelPolisher are comparing it to the libraries listed below
Sorting:
- memote – the genome-scale metabolic model test suite☆133Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- The BiGG Models website server☆83Updated 5 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- ReFramed: metabolic modeling package☆59Updated 2 months ago
- Repository of tutorials for The COBRA Toolbox☆22Updated 3 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆22Updated 4 years ago
- cameo - computer aided metabolic engineering & optimization☆117Updated 2 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 2 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 5 months ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆263Updated this week
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Python package to study microbial communities using metabolic modeling.☆104Updated last month
- Curation and analysis of metabolic models☆35Updated last year
- The standard for open-source GEMs on GitHub☆19Updated last year
- ☆24Updated 9 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 4 months ago
- CarveMe: genome-scale metabolic model reconstruction☆175Updated 3 months ago
- EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises c…☆123Updated 2 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- DNA plotting library for Python☆297Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆76Updated 2 months ago
- The generic genome-scale metabolic model of Homo sapiens☆118Updated last month
- A console-based alignment viewer☆114Updated last month