Alternatives and similar repositories for pyvipr

Users that are interested in pyvipr are comparing it to the libraries listed below

• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated last month
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last month
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆128Updated last month
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated this week
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• EBI-BioModels / SBO
  The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…
  ☆11Updated 2 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆115Updated this week
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last month
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 6 months ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated 3 weeks ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆189Updated 4 months ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆42Updated this week
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated last year
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 6 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• jvrana / Terrarium
  Computer-Aided Process Planner (CAPP) for Synthetic Biology Research
  ☆11Updated 4 years ago
• cytoscape / py4cytoscape
  Python library for calling Cytoscape Automation via CyREST
  ☆84Updated 3 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆55Updated last week
• SBRG / MASSpy
  ☆25Updated 2 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• eladnoor / component-contribution
  Standard reaction Gibbs energy estimation for biochemical reactions
  ☆19Updated 6 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆36Updated 2 years ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆137Updated last year
• jvrana / benchling-api
  A python wrapper for the benchling api
  ☆50Updated 5 years ago
• alubbock / microbench
  Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.
  ☆20Updated 2 weeks ago