Alternatives and similar repositories for pyvipr

Users that are interested in pyvipr are comparing it to the libraries listed below

• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated 2 months ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated this week
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 weeks ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 3 months ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last week
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 5 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆116Updated last week
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last week
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆50Updated 11 months ago
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆188Updated 3 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆52Updated 2 weeks ago
• jvrana / Terrarium
  Computer-Aided Process Planner (CAPP) for Synthetic Biology Research
  ☆11Updated 4 years ago
• SBRG / MASSpy
  ☆25Updated 2 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• libChEBI / libChEBIpy
  libChEBIpy: a Python API for accessing the ChEBI database
  ☆24Updated 2 months ago
• eladnoor / component-contribution
  Standard reaction Gibbs energy estimation for biochemical reactions
  ☆19Updated 6 years ago
• cytoscape / py4cytoscape
  Python library for calling Cytoscape Automation via CyREST
  ☆84Updated 2 months ago
• MoseleyBioinformaticsLab / mwtab
  The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…
  ☆12Updated 2 weeks ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆137Updated last year
• SynBioDex / pySBOL
  SWIG-Python wrappers implementing SBOL 2.2
  ☆25Updated 3 years ago
• erolkavvas / metabolic-allele-classifiers
  A flux balance analysis machine learning classifier for microbial GWAS
  ☆14Updated 5 years ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆42Updated this week