Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
☆28Mar 13, 2023Updated 3 years ago
Alternatives and similar repositories for pyvipr
Users that are interested in pyvipr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Particle Swarm Optimization algorithm in Python☆14Apr 23, 2024Updated 2 years ago
- Benchmarking and metadata tracking. CLI and Python integration. Extensible, with distributed/cluster support.☆20Jul 21, 2026Updated 2 weeks ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 6 months ago
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆17Jun 9, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26May 12, 2021Updated 5 years ago
- Dose response curves and DIP rates for cell proliferation data in Python☆16Jul 30, 2026Updated last week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago
- A web application to visualize and edit pathway models☆62Updated this week
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Rule-based modeling framework☆70Updated this week
- The official PySCeS project source code repository.☆41Mar 20, 2026Updated 4 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A web based visualization tool for process description maps in SBGN☆35May 5, 2026Updated 3 months ago
- This is the repository for the 2021 uq-bio Summer School☆13May 9, 2022Updated 4 years ago
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- ☆27Dec 9, 2022Updated 3 years ago
- Trust Region Optimization in Python☆28Nov 11, 2025Updated 8 months ago
- Python Environment for Modeling and Simulating Biological Systems☆142Jul 23, 2026Updated 2 weeks ago
- Biostatistics 6301: Introduction to Statistical Computing☆14Aug 15, 2024Updated last year
- libRoadRunner: A high-performance SBML simulator☆62Updated this week
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository for libCellML development.☆18Jul 9, 2026Updated last month
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Mar 9, 2026Updated 5 months ago
- Python utilities for SBML☆41Updated this week
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 6 years ago
- Release of the whole cell E. coli model.☆76Dec 10, 2024Updated last year
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆64Jun 22, 2026Updated last month
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- Python framework for Systems Biology modeling☆199May 19, 2026Updated 2 months ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆43Aug 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official implementation of DrugGEN in PyTorch☆12Oct 27, 2023Updated 2 years ago
- Software for analyzing high dimensional dose-response data☆19Mar 18, 2026Updated 4 months ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Predicting Protein – Ligand Interaction by using Deep Learning Models☆11Nov 13, 2018Updated 7 years ago
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated 3 months ago
- Core module for compound spring embedder based layout styles☆11May 5, 2026Updated 3 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆144Updated this week