SystemsBioinformatics / cbmpy
CBMPy is a Python based platform for constraint based modelling and analysis.
☆19Updated 10 months ago
Alternatives and similar repositories for cbmpy:
Users that are interested in cbmpy are comparing it to the libraries listed below
- Python package to study microbial communities using metabolic modeling.☆97Updated last week
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆59Updated last month
- ReFramed: metabolic modeling package☆58Updated 7 months ago
- Python package for building and analyzing models using ModelSEED☆22Updated last week
- SMETANA: a tool to analyse interactions in microbial communities☆58Updated 4 years ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆18Updated 2 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆78Updated 3 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 6 years ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated last week
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 7 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆17Updated 2 years ago
- ☆38Updated 3 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated last month
- memote – the genome-scale metabolic model test suite☆131Updated last year
- Nanopore Plasmid Sequencing☆32Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated 2 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆58Updated 3 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆91Updated last week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆165Updated 6 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 4 months ago
- Similarity networks of biosynthetic gene clusters☆101Updated last week
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆86Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- A console-based alignment viewer☆108Updated last week