SystemsBioinformatics / cbmpyLinks
CBMPy is a Python based platform for constraint based modelling and analysis.
☆19Updated last year
Alternatives and similar repositories for cbmpy
Users that are interested in cbmpy are comparing it to the libraries listed below
Sorting:
- ReFramed: metabolic modeling package☆61Updated 3 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 8 months ago
- Python package to study microbial communities using metabolic modeling.☆111Updated this week
- memote – the genome-scale metabolic model test suite☆142Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated last month
- SMETANA: a tool to analyse interactions in microbial communities☆64Updated 5 months ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- CarveMe: genome-scale metabolic model reconstruction☆186Updated 3 weeks ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated 3 months ago
- ☆131Updated last year
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 3 weeks ago
- Similarity networks of biosynthetic gene clusters☆130Updated last week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆187Updated last week
- antiSMASH☆223Updated last month
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆64Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆171Updated last month
- MGnify genome analysis pipeline☆106Updated 2 months ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆29Updated 6 years ago
- Logan Unitigs and Contigs☆171Updated 3 weeks ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- sensitive and precise assembly of short sequencing reads☆161Updated 11 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- High-quality circular representations of taxonomic and phylogenetic trees☆104Updated last year
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated 2 weeks ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆247Updated last year
- Download files from NCBI Entrez by accession☆129Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆114Updated 11 months ago
- Find clustered hits from a BLAST search☆121Updated 10 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆13Updated last month