A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
☆16Jul 24, 2026Updated this week
Alternatives and similar repositories for EscherConverter
Users that are interested in EscherConverter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 8 years ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 months ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 4 years ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 2 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- The BiGG Models website server☆91Nov 7, 2019Updated 6 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆42May 30, 2026Updated last month
- The standard for open-source GEMs on GitHub☆22Jul 2, 2026Updated 3 weeks ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆21Jun 26, 2023Updated 3 years ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A yFiles-based editor for SBGN diagrams written in Kotlin☆13Apr 2, 2020Updated 6 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆70Updated this week
- The java implementation of the MMTF API, decoder and encoder.☆12Dec 19, 2025Updated 7 months ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- Lightweight, portable variation registration and retrieval☆16Updated this week
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆19Oct 21, 2022Updated 3 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆33Mar 5, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆19Oct 8, 2024Updated last year
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 6 months ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆286Updated this week
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 9 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- ☆23Aug 28, 2020Updated 5 years ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Oct 29, 2019Updated 6 years ago
- agent based modelling☆39Aug 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago
- memote – the genome-scale metabolic model test suite☆149Aug 14, 2025Updated 11 months ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- CarveMe: genome-scale metabolic model reconstruction☆214Sep 12, 2025Updated 10 months ago
- Asynchronous job and file i/o management for containers☆15Dec 9, 2022Updated 3 years ago
- Compute sunrise and sunset times from geographical location, and reverse function☆11Sep 14, 2022Updated 3 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago