draeger-lab / EscherConverterLinks
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
☆16Updated this week
Alternatives and similar repositories for EscherConverter
Users that are interested in EscherConverter are comparing it to the libraries listed below
Sorting:
- Repository of tutorials for The COBRA Toolbox☆22Updated last month
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 4 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- ☆22Updated 4 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Updated 7 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆61Updated 4 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Curation and analysis of metabolic models☆34Updated last year
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- ReFramed: metabolic modeling package☆59Updated last month
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆24Updated 2 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆28Updated 6 years ago
- memote – the genome-scale metabolic model test suite☆132Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- The standard for open-source GEMs on GitHub☆19Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- Python package to study microbial communities using metabolic modeling.☆101Updated 2 weeks ago
- The BiGG Models website server☆82Updated 5 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 months ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆21Updated 4 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆54Updated 3 months ago
- A python implementation of flux balance analysis to model microbial metabolism☆27Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago