Alternatives and similar repositories for wholecell:

Users that are interested in wholecell are comparing it to the libraries listed below

• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆22Updated last week
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated last month
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 3 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• togoid / togoid-config
  Definition of link data for TogoID
  ☆13Updated this week
• opencobra / MASS-Toolbox
  Mass Action Stoichiometric Simulation (MASS) Toolbox
  ☆11Updated 7 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆27Updated 7 years ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆14Updated 2 years ago
• PriceLab / probannopy
  A python package for Probanno!
  ☆9Updated 4 years ago
• andreasottoriva / neutral-tumor-evolution
  Stochastic simulation of next-generation sequencing data from neutrally evolving tumors
  ☆10Updated 8 years ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 11 months ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last year
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆25Updated this week
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• latendre / PythonCyc
  ☆22Updated 4 years ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 4 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 2 years ago
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 5 years ago
• DataBiosphere / terra-docker
  ☆29Updated this week
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 5 years ago
• MetabolicAtlas / standard-GEM
  The standard for open-source GEMs on GitHub
  ☆19Updated last year
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated 2 weeks ago
• elixir-europe / BioHackathon-projects-2019
  This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…
  ☆23Updated 3 years ago