Alternatives and similar repositories for wholecell

Users that are interested in wholecell are comparing it to the libraries listed below

• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆35Updated 2 years ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated 3 weeks ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated last week
• hacchy1983 / CWL-workflows
  Workflows written in common workflow language (CWL)
  ☆14Updated 6 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• DataBiosphere / terra-docker
  ☆32Updated 2 months ago
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆22Updated 3 years ago
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆21Updated this week
• joachimwolff / algorithmsInBioinformatics
  Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python
  ☆18Updated 8 years ago
• biojs / biojs2galaxy
  A fast tool to convert BioJS components into Galaxy visualization plugins.
  ☆14Updated 5 years ago
• biohackathons / biohackathons.github.io
  International BioHackathon Directory of Events, Projects and Communities
  ☆12Updated 4 months ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆44Updated this week
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 9 months ago
• genenetwork / genenetwork2
  GeneNetwork (2nd generation)
  ☆37Updated last week
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆48Updated last week
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 8 months ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated 2 years ago
• biomart / BioMart
  ☆21Updated 9 years ago
• Edinburgh-Genome-Foundry / genedom
  Batch domestication of genetic parts with Python
  ☆16Updated 6 months ago
• togoid / togoid-config
  Definition of link data for TogoID
  ☆14Updated last week
• idekerlab / hiview
  HiView: the universal viewer for hierarchical data
  ☆16Updated 2 years ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 8 years ago
• sapporo-wes / tonkaz
  CLI tool to verify workflow reproducibility
  ☆16Updated last year
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆20Updated 6 months ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• elixir-europe / BioHackathon-projects-2019
  This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…
  ☆24Updated 4 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 6 years ago
• Edinburgh-Genome-Foundry / Primavera
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆33Updated 7 months ago
• ajrichards / htsint
  A Python library to work with high-throughput sequencing data in the context of data integration
  ☆14Updated 8 years ago