memote – the genome-scale metabolic model test suite
☆146Aug 14, 2025Updated 8 months ago
Alternatives and similar repositories for memote
Users that are interested in memote are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COBRApy is a package for constraint-based modeling of metabolic networks.☆560Apr 8, 2026Updated 3 weeks ago
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 3 years ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆87Apr 22, 2026Updated last week
- CarveMe: genome-scale metabolic model reconstruction☆203Sep 12, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Jan 11, 2019Updated 7 years ago
- The consensus GEM for Saccharomyces cerevisiae☆123Apr 13, 2026Updated 3 weeks ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated 11 months ago
- The standard for open-source GEMs on GitHub☆21Oct 26, 2023Updated 2 years ago
- ReFramed: metabolic modeling package☆63Sep 16, 2025Updated 7 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Oct 29, 2019Updated 6 years ago
- The BiGG Models website server☆90Nov 7, 2019Updated 6 years ago
- Build, share, and embed visualizations of metabolic pathways.☆236Aug 15, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package to study microbial communities using metabolic modeling.☆127Mar 31, 2026Updated last month
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆283Updated this week
- D3.js based visualizations of cobrapy metabolic models☆50Mar 10, 2020Updated 6 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆260Jul 27, 2024Updated last year
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Jan 28, 2025Updated last year
- Analysis of ensembles of metabolic network reconstructions☆22Feb 9, 2026Updated 2 months ago
- ☆26Dec 9, 2022Updated 3 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Enzyme-constrained genome-scale models in python☆37Oct 25, 2023Updated 2 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆212Mar 5, 2026Updated last month
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆126Apr 19, 2026Updated 2 weeks ago
- Computation of Microbial Ecosystems in Time and Space☆27Feb 26, 2026Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆137Apr 10, 2026Updated 3 weeks ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆50Mar 23, 2026Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆68Jan 6, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆31Mar 5, 2019Updated 7 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- agent based modelling☆35Aug 28, 2024Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- From annotated genomes to metabolic screening in large scale microbiotas☆71Apr 27, 2026Updated last week
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆24Feb 6, 2026Updated 2 months ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated last month