opencobra / memoteLinks
memote – the genome-scale metabolic model test suite
☆132Updated last year
Alternatives and similar repositories for memote
Users that are interested in memote are comparing it to the libraries listed below
Sorting:
- CarveMe: genome-scale metabolic model reconstruction☆170Updated last month
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- ReFramed: metabolic modeling package☆59Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆71Updated 3 weeks ago
- Python package to study microbial communities using metabolic modeling.☆100Updated 2 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆61Updated 4 months ago
- A container for all enzyme constrained models created by GECKO.☆13Updated 2 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆112Updated 3 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- The BiGG Models website server☆82Updated 5 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆180Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆109Updated 2 months ago
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆239Updated 10 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- The generic genome-scale metabolic model of Homo sapiens☆115Updated 2 weeks ago
- antiSMASH☆209Updated last week
- Python package for building and analyzing models using ModelSEED☆23Updated last month
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Enzyme-constrained genome-scale models in python☆28Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆28Updated 6 years ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 4 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆59Updated last month
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 4 months ago
- Pipeline for metabolic annotation of microbial genomes☆147Updated 2 months ago
- The standard for open-source GEMs on GitHub☆19Updated last year