Alternatives and similar repositories for memote

Users that are interested in memote are comparing it to the libraries listed below

• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆190Updated 3 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆119Updated last week
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated 3 weeks ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆64Updated this week
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆113Updated last week
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆62Updated 3 months ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆253Updated last year
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆15Updated 3 years ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆195Updated this week
• antismash / antismash
  antiSMASH
  ☆238Updated 3 weeks ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆24Updated 7 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆114Updated 2 weeks ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated this week
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆29Updated 2 years ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated 2 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆162Updated last year
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆59Updated this week
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆261Updated 3 months ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆90Updated 4 months ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆30Updated 6 years ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆134Updated 5 months ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆65Updated 7 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆179Updated 3 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆49Updated 5 years ago
• althonos / pyrodigal
  Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
  ☆172Updated 3 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago