Python Environment for Modeling and Simulating Biological Systems
☆141Apr 10, 2026Updated last month
Alternatives and similar repositories for tellurium
Users that are interested in tellurium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- libRoadRunner: A high-performance SBML simulator☆60Mar 26, 2026Updated last month
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆43May 18, 2026Updated last week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆127Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated 2 months ago
- Model predictive control (MPC) for fermentations☆12Feb 28, 2019Updated 7 years ago
- Rule-based modeling framework☆68May 8, 2026Updated 2 weeks ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24May 16, 2026Updated last week
- ☆26Dec 9, 2022Updated 3 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆66Apr 2, 2026Updated last month
- COBRApy is a package for constraint-based modeling of metabolic networks.☆560Apr 8, 2026Updated last month
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- Symbolic Kinetic Models with Python☆37Jun 4, 2025Updated 11 months ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- A tool for semantics-based annotation and composition of biosimulation models☆20Jan 6, 2023Updated 3 years ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 2 months ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆30Jun 21, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated last month
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 weeks ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 8 months ago
- Computation of Microbial Ecosystems in Time and Space☆27May 5, 2026Updated 2 weeks ago
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- SWIG-Python wrappers implementing SBOL 2.2☆25Jan 20, 2022Updated 4 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆90Updated this week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Jan 28, 2025Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated 10 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆139Apr 29, 2026Updated 3 weeks ago
- Analysis of ensembles of metabolic network reconstructions☆22Updated this week
- Python package to study microbial communities using metabolic modeling.☆128Mar 31, 2026Updated last month
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated last week