Alternatives and similar repositories for tellurium

Users that are interested in tellurium are comparing it to the libraries listed below

• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆115Updated this week
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆189Updated 4 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆72Updated 11 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆55Updated last week
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last month
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆41Updated last year
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆49Updated 5 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 6 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆58Updated last month
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• SBRG / MASSpy
  ☆25Updated 2 years ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆33Updated last week
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated this week
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆29Updated 2 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆63Updated 6 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆42Updated 4 months ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆23Updated 5 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆123Updated 2 months ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 10 months ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last month
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆228Updated last year
• SynBioDex / pySBOL
  SWIG-Python wrappers implementing SBOL 2.2
  ☆25Updated 3 years ago
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆12Updated 9 months ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 6 years ago