Alternatives and similar repositories for tellurium

Users that are interested in tellurium are comparing it to the libraries listed below

• pysb / pysb
  Python framework for Systems Biology modeling
  ☆191Updated 6 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆123Updated last week
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆124Updated 3 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆76Updated last year
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆66Updated 8 months ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last month
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated 2 months ago
• SBRG / MASSpy
  ☆26Updated 3 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 5 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆23Updated 7 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆56Updated last month
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆126Updated last week
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆43Updated 7 months ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆40Updated this week
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆13Updated 11 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆41Updated last year
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆34Updated 8 months ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated 3 weeks ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆65Updated 9 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆34Updated 2 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆47Updated last month
• eladnoor / component-contribution
  Standard reaction Gibbs energy estimation for biochemical reactions
  ☆19Updated 7 years ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 6 years ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆115Updated 2 months ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆44Updated 2 weeks ago