Python Environment for Modeling and Simulating Biological Systems
☆146Aug 29, 2026Updated 3 weeks ago
Alternatives and similar repositories for tellurium
Users that are interested in tellurium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- libRoadRunner: A high-performance SBML simulator☆63Sep 5, 2026Updated 2 weeks ago
- ☆23Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆44Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Registry of containerized biosimulation tools that support a standard command-line interface☆17Updated this week
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆130Updated this week
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- A simplified python interface to COPASI.☆28Sep 14, 2026Updated last week
- Model predictive control (MPC) for fermentations☆13Feb 28, 2019Updated 7 years ago
- Rule-based modeling framework☆70Sep 14, 2026Updated last week
- ☆27Dec 9, 2022Updated 3 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Updated this week
- A tool for semantics-based annotation and composition of biosimulation models☆20Jun 24, 2026Updated 2 months ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆587Updated this week
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated 2 months ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆32Jun 21, 2022Updated 4 years ago
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SWIG-Python wrappers implementing SBOL 2.2☆25Jan 20, 2022Updated 4 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 5 months ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 6 months ago
- Repository of tutorials for The COBRA Toolbox☆25Aug 24, 2026Updated 3 weeks ago
- Reaction Inclusion by Parsimony and Transcript Distribution☆15Feb 14, 2023Updated 3 years ago
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆94Updated this week
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆47Jul 27, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- High-performance sensitivity analysis for large ordinary differential equation models☆144Sep 11, 2026Updated last week
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated last month
- Python package to study microbial communities using metabolic modeling.☆136Updated this week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆237May 12, 2026Updated 4 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆40Jan 11, 2019Updated 7 years ago
- ☆23Aug 28, 2020Updated 6 years ago