sys-bio / telluriumLinks
Python Environment for Modeling and Simulating Biological Systems
☆123Updated 3 months ago
Alternatives and similar repositories for tellurium
Users that are interested in tellurium are comparing it to the libraries listed below
Sorting:
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆116Updated last week
- Python framework for Systems Biology modeling☆188Updated 3 months ago
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- Rule-based modeling framework☆65Updated 5 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- libRoadRunner: A high-performance SBML simulator☆52Updated 2 weeks ago
- The BiGG Models website server☆84Updated 5 years ago
- Release of the whole cell E. coli model.☆71Updated 10 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- ☆25Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 weeks ago
- A python toolbox for 13C metabolic flux analysis☆23Updated 3 months ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆42Updated 3 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 2 months ago
- Metabolic Engineering Workbench☆40Updated last year
- Python utilities for SBML☆41Updated last week
- Symbolic Kinetic Models with Python☆32Updated 4 months ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 7 months ago
- Enzyme-constrained genome-scale models in python☆28Updated 2 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 5 months ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated last month
- Whole Cell Model of E. coli☆29Updated this week
- Curation and analysis of metabolic models☆35Updated 2 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- The consensus GEM for Saccharomyces cerevisiae☆113Updated 2 weeks ago