Python Environment for Modeling and Simulating Biological Systems
☆142Apr 10, 2026Updated 2 months ago
Alternatives and similar repositories for tellurium
Users that are interested in tellurium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- libRoadRunner: A high-performance SBML simulator☆62Updated this week
- ☆21Apr 4, 2026Updated 2 months ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆43Jun 7, 2026Updated last week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Registry of containerized biosimulation tools that support a standard command-line interface☆15May 28, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 10 months ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated 3 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆129Updated this week
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- Rule-based modeling framework☆68Jun 2, 2026Updated last week
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆67May 28, 2026Updated 2 weeks ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆567Jun 6, 2026Updated last week
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- ReFramed: metabolic modeling package☆64May 4, 2026Updated last month
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 2 months ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆30Jun 21, 2022Updated 3 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 2 months ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated last month
- Computation of Microbial Ecosystems in Time and Space☆28May 5, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SWIG-Python wrappers implementing SBOL 2.2☆25Jan 20, 2022Updated 4 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆90May 29, 2026Updated 2 weeks ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated 11 months ago
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated 3 weeks ago
- High-performance sensitivity analysis for large ordinary differential equation models☆139Updated this week
- Reaction Inclusion by Parsimony and Transcript Distribution☆13Feb 14, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python package to study microbial communities using metabolic modeling.☆129Updated this week
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated last month
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆37Jan 11, 2019Updated 7 years ago
- Toolkit for discovering and aggregating data for whole-cell modeling☆15Jan 19, 2022Updated 4 years ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 2 years ago
- ☆23Aug 28, 2020Updated 5 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 3 months ago