Alternatives and similar repositories for tellurium

Users that are interested in tellurium are comparing it to the libraries listed below

• pysb / pysb
  Python framework for Systems Biology modeling
  ☆190Updated 5 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆121Updated 2 weeks ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆86Updated 6 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆74Updated last year
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆42Updated 5 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 7 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆55Updated 2 weeks ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated last month
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 6 years ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆115Updated last month
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆212Updated 2 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last month
• SBRG / MASSpy
  ☆26Updated 3 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 11 months ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆34Updated this week
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆23Updated 6 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆30Updated 2 years ago
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆13Updated 10 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆123Updated 3 weeks ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last month
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆232Updated last year
• opencobra / cobratoolbox
  The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
  ☆276Updated 3 weeks ago