Alternatives and similar repositories for tellurium

Users that are interested in tellurium are comparing it to the libraries listed below

• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆112Updated last week
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆182Updated 4 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆117Updated 2 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆63Updated last month
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 4 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆51Updated this week
• SBRG / MASSpy
  ☆24Updated 2 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last week
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆69Updated 7 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆181Updated last week
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last month
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• eladnoor / component-contribution
  Standard reaction Gibbs energy estimation for biochemical reactions
  ☆17Updated 6 years ago
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 5 years ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆22Updated last week
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆61Updated 2 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆39Updated last week
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆137Updated last year
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆38Updated 2 months ago