Python Environment for Modeling and Simulating Biological Systems
☆137Apr 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for tellurium
Users that are interested in tellurium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- libRoadRunner: A high-performance SBML simulator☆59Mar 26, 2026Updated last month
- ☆20Apr 4, 2026Updated last month
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆43Apr 26, 2026Updated last week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Apr 27, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 8 months ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆125Mar 13, 2026Updated last month
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated last month
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- Model predictive control (MPC) for fermentations☆12Feb 28, 2019Updated 7 years ago
- Rule-based modeling framework☆67Apr 24, 2026Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆26Dec 9, 2022Updated 3 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆65Apr 2, 2026Updated last month
- COBRApy is a package for constraint-based modeling of metabolic networks.☆560Apr 8, 2026Updated 3 weeks ago
- BRENDA parser in python☆23May 16, 2022Updated 3 years ago
- Symbolic Kinetic Models with Python☆36Jun 4, 2025Updated 11 months ago
- ReFramed: metabolic modeling package☆63Sep 16, 2025Updated 7 months ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- A tool for semantics-based annotation and composition of biosimulation models☆20Jan 6, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆30Jun 21, 2022Updated 3 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated last month
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated last week
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 8 months ago
- Computation of Microbial Ecosystems in Time and Space☆27Feb 26, 2026Updated 2 months ago
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- SWIG-Python wrappers implementing SBOL 2.2☆25Jan 20, 2022Updated 4 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆87Apr 22, 2026Updated last week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Jan 28, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated 9 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆137Updated this week
- Analysis of ensembles of metabolic network reconstructions☆22Feb 9, 2026Updated 2 months ago
- Reaction Inclusion by Parsimony and Transcript Distribution☆13Feb 14, 2023Updated 3 years ago