lanl / PyBNFLinks
An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.
☆24Updated last week
Alternatives and similar repositories for PyBNF
Users that are interested in PyBNF are comparing it to the libraries listed below
Sorting:
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆113Updated this week
- Python Environment for Modeling and Simulating Biological Systems☆122Updated 3 weeks ago
- ☆22Updated 4 years ago
- ☆24Updated 2 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 3 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 11 months ago
- Standard reaction Gibbs energy estimation for biochemical reactions☆17Updated 6 years ago
- A Python framework for structural bioinformatics.☆13Updated last year
- Rule-based modeling framework☆64Updated 2 months ago
- Python framework for Systems Biology modeling☆183Updated 2 weeks ago
- Repository of tutorials for The COBRA Toolbox☆22Updated 2 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- The BiGG Models website server☆83Updated 5 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Curation and analysis of metabolic models☆35Updated last year
- libRoadRunner: A high-performance SBML simulator☆51Updated 3 weeks ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Python package for analyzing and visualizing iModulons☆13Updated last month
- A python toolbox for 13C metabolic flux analysis☆23Updated last month
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated last month
- Release of the whole cell E. coli model.☆68Updated 7 months ago
- Gillespie Stochastic Simulation Algorithm☆14Updated 12 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 5 months ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- Template-based RNA secondary structure visualization☆26Updated 8 months ago