Toolbox for including enzyme constraints on a genome-scale model.
☆90Apr 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for GECKO
Users that are interested in GECKO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 3 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆126Apr 19, 2026Updated last month
- The consensus GEM for Saccharomyces cerevisiae☆125Apr 30, 2026Updated 3 weeks ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated last year
- The BiGG Models website server☆90Nov 7, 2019Updated 6 years ago
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆283May 15, 2026Updated last week
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆27Jul 12, 2022Updated 3 years ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- COBRApy is a package for constraint-based modeling of metabolic networks.☆560Apr 8, 2026Updated last month
- ☆10Oct 21, 2023Updated 2 years ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- ReFramed: metabolic modeling package☆63May 4, 2026Updated 2 weeks ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Jan 11, 2019Updated 7 years ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 weeks ago
- 代谢网络模型构建和使用实操☆33Mar 18, 2023Updated 3 years ago
- Reaction Inclusion by Parsimony and Transcript Distribution☆13Feb 14, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- ☆11Mar 11, 2025Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆204Sep 12, 2025Updated 8 months ago
- ☆19Aug 29, 2025Updated 8 months ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated last week
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆66Apr 2, 2026Updated last month
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20Apr 27, 2026Updated 3 weeks ago
- ☆17May 8, 2024Updated 2 years ago
- The generic genome-scale metabolic model of Homo sapiens☆144Mar 30, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Python parser for the BRENDA database☆33Sep 15, 2023Updated 2 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- ☆24Oct 19, 2023Updated 2 years ago
- Symbolic Kinetic Models with Python☆36Jun 4, 2025Updated 11 months ago
- Python package for building and analyzing models using ModelSEED☆27Feb 11, 2026Updated 3 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆14Aug 20, 2025Updated 9 months ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆193Jul 4, 2023Updated 2 years ago