sbmlteam / libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
☆45Updated last week
Alternatives and similar repositories for libsbml:
Users that are interested in libsbml are comparing it to the libraries listed below
- libRoadRunner: A high-performance SBML simulator☆44Updated this week
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆23Updated 11 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 3 months ago
- Python utilities for SBML☆40Updated 3 weeks ago
- cy3sbml: SBML for Cytoscape 3☆13Updated 2 years ago
- LibSBMLSim: A library for simulating SBML models☆13Updated 3 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 6 months ago
- A tool for creating Python implementations of SBML models.☆13Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆23Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆104Updated this week
- ☆18Updated last week
- Build and test new apps for the KBase platform☆28Updated 9 months ago
- Rule-based modeling framework☆61Updated 4 months ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆15Updated 4 months ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆37Updated 2 years ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- Repository for libCellML development.☆17Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆110Updated 3 weeks ago
- Repository of tutorials for The COBRA Toolbox☆20Updated 3 months ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆40Updated last week
- ☆22Updated 2 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆28Updated last year
- The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the …☆20Updated last week
- biotoolsregistry : discovery portal for bioinformatics☆72Updated last week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- The reference implementation of the SBOL Visual standard☆33Updated last year
- ☆16Updated last year
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 3 weeks ago