LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
☆57Oct 10, 2026Updated last week
Alternatives and similar repositories for libsbml
Users that are interested in libsbml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Sep 17, 2026Updated last month
- Python utilities for SBML☆42Oct 10, 2026Updated last week
- libRoadRunner: A high-performance SBML simulator☆63Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- ☆23Sep 19, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- cy3sbml: SBML for Cytoscape 3☆16Oct 10, 2026Updated last week
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 6 months ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆43Oct 6, 2026Updated last week
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆67Sep 8, 2026Updated last month
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- ☆27Dec 9, 2022Updated 3 years ago
- Python package for working with PEtab files☆18Updated this week
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆21Oct 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Updated this week
- A simplified python interface to COPASI.☆28Updated this week
- C++ code for implementations of the temporal Gillespie algorithm.☆12Feb 16, 2019Updated 7 years ago
- Import SBML dynamic models into the Julia SciML ecosystem for jump (Gillespie), SDE, and ODE simulations☆25Updated this week
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆14May 16, 2023Updated 3 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 8 months ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 4 months ago
- Spatial bio-chemical reaction model editor and simulator☆19Updated this week
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- research software encyclopedia database☆14Oct 11, 2026Updated last week
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 3 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆13Aug 19, 2021Updated 5 years ago
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆21Jun 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rule-based modeling framework☆70Oct 2, 2026Updated 2 weeks ago
- Finite Element tools in Julia: Meshing of medical images☆10Apr 18, 2025Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆130Updated this week
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆24Mar 15, 2018Updated 8 years ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 4 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 4 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago