LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
☆56May 27, 2026Updated last week
Alternatives and similar repositories for libsbml
Users that are interested in libsbml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python utilities for SBML☆41Apr 23, 2026Updated last month
- libRoadRunner: A high-performance SBML simulator☆62Mar 26, 2026Updated 2 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated 2 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 4 months ago
- ☆21Apr 4, 2026Updated 2 months ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 2 months ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆42May 30, 2026Updated last week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆63Mar 27, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- A simplified python interface to COPASI.☆28Mar 19, 2026Updated 2 months ago
- Python package for working with PEtab files☆16May 27, 2026Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆33Apr 14, 2026Updated last month
- The Synthetic Biology Open Language (SBOL)☆23Apr 25, 2023Updated 3 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- research software encyclopedia database☆14May 31, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial bio-chemical reaction model editor and simulator☆19Updated this week
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 2 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆12Aug 19, 2021Updated 4 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 3 years ago
- Rule-based modeling framework☆68Updated this week
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆21Jun 26, 2023Updated 2 years ago
- Python library for SBGN☆11May 19, 2026Updated 2 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆128Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12May 12, 2023Updated 3 years ago
- ☆11Jun 29, 2014Updated 11 years ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 4 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Pay tribute to your contributors! A tool to automatically update contributor files.☆14May 19, 2026Updated 2 weeks ago