LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
☆55Aug 5, 2026Updated this week
Alternatives and similar repositories for libsbml
Users that are interested in libsbml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Mar 9, 2026Updated 5 months ago
- Python utilities for SBML☆41Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 8 months ago
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Updated this week
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 4 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 5 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆64Jun 22, 2026Updated last month
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- ☆27Dec 9, 2022Updated 3 years ago
- Python package for working with PEtab files☆17Updated this week
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆19Oct 8, 2024Updated last year
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Jul 21, 2026Updated 2 weeks ago
- A simplified python interface to COPASI.☆28Jun 15, 2026Updated last month
- C++ code for implementations of the temporal Gillespie algorithm.☆12Feb 16, 2019Updated 7 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 2 months ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 2 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆13Aug 19, 2021Updated 4 years ago
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆21Jun 26, 2023Updated 3 years ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- Rule-based modeling framework☆70Updated this week
- Python solution for the application of machine learning to Pop PK model selection.☆32Jul 27, 2026Updated 2 weeks ago
- Python library for SBGN☆11May 19, 2026Updated 2 months ago
- Sensitivity Analysis library for Matlab☆19Feb 23, 2026Updated 5 months ago
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆24Mar 15, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆129Updated this week
- Finite Element tools in Julia: Meshing of medical images☆10Apr 18, 2025Updated last year
- ☆11Jun 29, 2014Updated 12 years ago
- How to build and distribute a C++ shared library inside a Python wheel using Poetry☆10Feb 17, 2020Updated 6 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Repository for libCellML development.☆18Jul 9, 2026Updated last month
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago