sbmlteam / libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
☆47Updated this week
Alternatives and similar repositories for libsbml:
Users that are interested in libsbml are comparing it to the libraries listed below
- libRoadRunner: A high-performance SBML simulator☆48Updated last week
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆25Updated 2 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆105Updated 3 weeks ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 6 months ago
- LibSBMLSim: A library for simulating SBML models☆13Updated 3 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 8 months ago
- Rule-based modeling framework☆61Updated this week
- Python utilities for SBML☆41Updated this week
- cy3sbml: SBML for Cytoscape 3☆14Updated last month
- A tool for creating Python implementations of SBML models.☆14Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 4 months ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- Python Environment for Modeling and Simulating Biological Systems☆116Updated 3 weeks ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- Repository for libCellML development.☆17Updated 5 months ago
- ☆18Updated last week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated this week
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆22Updated 7 years ago
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- CompuCell3D public source code repository☆66Updated this week
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆31Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- A simplified python interface to COPASI.☆20Updated this week
- Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions☆28Updated 2 weeks ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.☆16Updated 8 months ago