LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
☆59Nov 3, 2026Updated this week
Alternatives and similar repositories for libsbml
Users that are interested in libsbml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Sep 17, 2026Updated last month
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆28Updated this week
- Python utilities for SBML☆43Updated this week
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆43Oct 6, 2026Updated last month
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- libRoadRunner: A high-performance SBML simulator☆64Updated this week
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆21Oct 8, 2024Updated 2 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆22Jun 26, 2023Updated 3 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 7 months ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆17Oct 23, 2026Updated 2 weeks ago
- A simplified python interface to COPASI.☆29Oct 24, 2026Updated 2 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆133Updated this week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆67Oct 28, 2026Updated last week
- ☆27Dec 9, 2022Updated 3 years ago
- A yFiles-based editor for SBGN diagrams written in Kotlin☆13Apr 2, 2020Updated 6 years ago
- Python package for working with PEtab files☆18Oct 26, 2026Updated last week
- Native python implementation of SBOL 3.0 specification☆52Sep 30, 2026Updated last month
- Stochastic delay differential equations (SDDE) solvers for the SciML scientific machine learning ecosystem☆26May 12, 2026Updated 5 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Updated this week
- Import SBML dynamic models into the Julia SciML ecosystem for jump (Gillespie), SDE, and ODE simulations☆25Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Full stack application for creating, combining, and storing combinatorial genetic design spaces.☆15Updated this week
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 8 months ago
- pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the networ…☆14Mar 20, 2024Updated 2 years ago
- The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the …☆26Sep 22, 2026Updated last month
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆14May 16, 2023Updated 3 years ago
- The Synthetic Biology Open Language (SBOL)☆23Apr 25, 2023Updated 3 years ago
- MODE: A modern ordinary differential equation solver for C++ and CUDA.☆13Sep 22, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- C++ code for implementations of the temporal Gillespie algorithm.☆12Feb 16, 2019Updated 7 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 5 months ago
- research software encyclopedia database☆14Updated this week
- Spatial bio-chemical reaction model editor and simulator☆19Updated this week
- Julia Interface to https://github.com/compiler-research/CppInterOp☆19May 10, 2025Updated last year
- Differentiable constraint-based metabolic models☆14Oct 15, 2026Updated 3 weeks ago