Alternatives and similar repositories for libsbml

Users that are interested in libsbml are comparing it to the libraries listed below

• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆55Updated last week
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 7 months ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last week
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆15Updated 2 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆123Updated this week
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆130Updated last month
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆26Updated last month
• sys-bio / antimony
  ☆19Updated 2 months ago
• sys-bio / simplesbml
  Python package for building SBML models without needing to use libSBML.
  ☆10Updated 4 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆79Updated this week
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last month
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last week
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last month
• EBI-BioModels / SBO
  The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…
  ☆11Updated 2 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆15Updated 3 years ago
• CiaranWelsh / pycotools3
  A Python toolbox for COPASI
  ☆13Updated last year
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆42Updated last week
• SED-ML / KiSAO
  Ontology of algorithms for analyzing biological models, their parameters, and their outputs
  ☆11Updated last year
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 6 years ago
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆61Updated this week
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 10 months ago
• cellml / libcellml
  Repository for libCellML development.
  ☆17Updated last month
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• common-workflow-language / user_guide
  The CWL v1.0 - v1.2 user guide
  ☆43Updated last week
• singularityhub / github-ci
  An example GitHub Action (CI) to build a Singularity container
  ☆71Updated 2 years ago
• yaml2sbml-dev / yaml2sbml
  Tool to convert an ODE model specified in the YAML format to SBML.
  ☆12Updated 2 years ago