PEtab-dev / libpetab-pythonLinks
Python package for working with PEtab files
☆14Updated last month
Alternatives and similar repositories for libpetab-python
Users that are interested in libpetab-python are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated 2 weeks ago
- Model selection for PEtab☆12Updated 4 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 3 weeks ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated 2 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 4 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆120Updated this week
- Python utilities for SBML☆41Updated 2 weeks ago
- A simplified python interface to COPASI.☆20Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 6 months ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 3 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Trust Region Optimization in Python☆27Updated 2 years ago
- libRoadRunner: A high-performance SBML simulator☆50Updated this week
- Efficient random sampling for COBRA models☆13Updated 3 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆118Updated 2 weeks ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- python Parameter EStimation TOolbox☆249Updated last month
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated last week
- A python toolbox for 13C metabolic flux analysis☆22Updated 9 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆109Updated this week
- Rule-based modeling framework☆64Updated 3 weeks ago
- Modeling toolkit for biochemical simulation☆74Updated 5 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 9 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 10 months ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- Symbolic Kinetic Models with Python☆33Updated 3 weeks ago