Python package for working with PEtab files
☆16Feb 4, 2026Updated 3 weeks ago
Alternatives and similar repositories for libpetab-python
Users that are interested in libpetab-python are comparing it to the libraries listed below
Sorting:
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Jun 13, 2023Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆62Updated this week
- Model selection for PEtab☆13Dec 16, 2025Updated 2 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆31Feb 11, 2026Updated 2 weeks ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Dec 15, 2025Updated 2 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆132Updated this week
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Dec 2, 2024Updated last year
- Trust Region Optimization in Python☆28Nov 11, 2025Updated 3 months ago
- python Parameter EStimation TOolbox☆266Updated this week
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Aug 21, 2024Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Mar 2, 2020Updated 5 years ago
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Apr 6, 2024Updated last year
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated last month
- Python utilities for SBML☆41Jan 22, 2026Updated last month
- Create nice documentation for your MatLab project using doxygen☆15Jul 14, 2019Updated 6 years ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆18Feb 13, 2026Updated 2 weeks ago
- A simplified python interface to COPASI.☆25Jan 13, 2026Updated last month
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Dec 3, 2025Updated 2 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆26May 10, 2024Updated last year
- XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevi…☆11Jul 25, 2025Updated 7 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- ☆15Feb 3, 2026Updated 3 weeks ago
- Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work☆11Mar 4, 2021Updated 4 years ago
- Code to accompany my blog post "Dissecting the Hype With Cheminformatics"☆12Sep 22, 2019Updated 6 years ago
- Draft cell type definitions from data - candidates for inclusion in CL☆12Jul 8, 2025Updated 7 months ago
- Compositional Dietary Nutrition Ontology☆14Feb 15, 2026Updated last week
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Workshop on Synergizing Biomedical Ontologies, July 14-16 (Virtual)☆12Aug 6, 2021Updated 4 years ago
- Network representation learning on drug-target-side effects-indication graphs for side effect prediction☆13Feb 4, 2020Updated 6 years ago
- Python parser for UCUM (Unified Code for Units of Measure) incl. converter to pint units☆14Feb 20, 2026Updated last week
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆14Feb 16, 2026Updated last week
- Elevated - The Project☆16Jul 2, 2025Updated 7 months ago
- Notebook for standardization of actvity data, nonadditivity analysis and its evaluation.☆12Mar 16, 2023Updated 2 years ago
- Python library for SBGN☆11Feb 9, 2026Updated 2 weeks ago
- 📐 Results for the Ranking Metrics submission @ GLB 2022☆10Apr 6, 2022Updated 3 years ago
- Docker container for bioinformatics tools and pipelines☆15Oct 11, 2024Updated last year