biosimulators / Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
☆13Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for Biosimulators
- The generic genome-scale metabolic model of Homo sapiens☆98Updated this week
- A Universal Modeling Language for Metabolic Flux Analysis☆9Updated 6 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆92Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆39Updated this week
- A simplified python interface to COPASI.☆19Updated this week
- Build, share, and embed visualizations of metabolic pathways.☆210Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆109Updated 5 months ago
- The standard for open-source GEMs on GitHub☆19Updated last year
- Release of the whole cell E. coli model.☆60Updated last year
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆14Updated last year
- The BiGG Models website server☆80Updated 5 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 2 weeks ago
- A python toolbox for 13C metabolic flux analysis☆19Updated 2 months ago
- A modular compiler for biological chemical reaction networks☆40Updated 2 months ago
- The consensus GEM for Saccharomyces cerevisiae☆95Updated this week
- ☆24Updated last month
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Rule-based modeling framework☆60Updated last month
- Open source genome-scale metabolic models of human and model animals☆20Updated 3 weeks ago
- WebLogo 3: Sequence Logos redrawn☆146Updated 2 weeks ago
- Web application enabling users and software to browse, upload, and share synthetic biology designs☆73Updated 2 months ago
- Software for the visualization of sequence-function relationships☆183Updated last year
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆51Updated last year
- A Python framework for structural systems biology☆104Updated 3 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆21Updated 2 weeks ago
- ReFramed: metabolic modeling package☆56Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆67Updated 3 weeks ago
- Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel forma…