Alternatives and similar repositories for Biosimulators:

Users that are interested in Biosimulators are comparing it to the libraries listed below

• BuildACell / bioCRNpyler
  A modular compiler for biological chemical reaction networks
  ☆44Updated 3 weeks ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆105Updated last week
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆113Updated last week
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆20Updated 7 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆56Updated this week
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 2 months ago
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆12Updated last month
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆115Updated 2 years ago
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆221Updated 7 months ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆65Updated 3 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆104Updated this week
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated last year
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆108Updated last month
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆82Updated 5 years ago
• SynBioDex / pySBOL2
  A pure Python implementation of the SBOL standard.
  ☆22Updated last month
• octantbio / octopus
  A scalable cloning system
  ☆25Updated last year
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated last month
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆232Updated this week
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆32Updated last week
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆14Updated last month
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 7 months ago
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated 7 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated this week
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆23Updated last year
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated last year
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆38Updated 2 weeks ago