SBRG / cobradbLinks
COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is available under the MIT license.
☆20Updated 5 years ago
Alternatives and similar repositories for cobradb
Users that are interested in cobradb are comparing it to the libraries listed below
Sorting:
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- The BiGG Models website server☆83Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated 3 weeks ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆117Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Curation and analysis of metabolic models☆35Updated last year
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- ☆22Updated 4 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆56Updated 4 months ago
- Python Environment for Modeling and Simulating Biological Systems☆119Updated this week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 5 months ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 3 months ago
- Metabolic Engineering Workbench☆40Updated last year
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 3 months ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated 3 weeks ago
- ☆24Updated 2 years ago
- biotoolsregistry : discovery portal for bioinformatics☆77Updated last week
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Whole Cell Model of E. coli☆27Updated this week
- A route planner for DNA assembly☆36Updated 2 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆61Updated 2 months ago
- ReFramed: metabolic modeling package☆59Updated 2 months ago
- memote – the genome-scale metabolic model test suite☆133Updated last year
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 8 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆27Updated 2 years ago
- Template-based RNA secondary structure visualization☆26Updated 7 months ago