COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is available under the MIT license.
☆20Oct 29, 2019Updated 6 years ago
Alternatives and similar repositories for cobradb
Users that are interested in cobradb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The BiGG Models website server☆91Nov 7, 2019Updated 6 years ago
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated last month
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated last month
- memote – the genome-scale metabolic model test suite☆147Aug 14, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- Protein Purification☆11Dec 7, 2016Updated 9 years ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 2 months ago
- ☆11Apr 10, 2022Updated 4 years ago
- A Python framework for structural systems biology☆109Dec 7, 2020Updated 5 years ago
- Bremges et al. (2015). GigaScience, 4:33.☆12Dec 29, 2023Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 5 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- COBRApy is a package for constraint-based modeling of metabolic networks.☆571Jun 6, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- libChEBIpy: a Python API for accessing the ChEBI database☆25Aug 26, 2025Updated 10 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 4 months ago
- Learning Ontologies Via Embeddings☆12Jul 6, 2023Updated 2 years ago
- a minimal String type for Julia that allows for efficient string representation and transfer☆22Apr 23, 2026Updated 2 months ago
- The Genome Analysis Tutorial Page.☆13Oct 5, 2019Updated 6 years ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago
- CarveMe: genome-scale metabolic model reconstruction☆210Sep 12, 2025Updated 9 months ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Dec 10, 2018Updated 7 years ago
- A Qiime plugin for MICOM.☆10Jun 22, 2026Updated last week
- Python package to study microbial communities using metabolic modeling.☆133Jun 22, 2026Updated 2 weeks ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 10 years ago
- ☆16Nov 26, 2021Updated 4 years ago
- ☆15Apr 2, 2025Updated last year
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- Gosling custom component for Streamlit☆13Jun 7, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 3 years ago
- Lookup Latin/Greek vocabulary from the command line using Python/Beautiful Soup.☆15Dec 30, 2025Updated 6 months ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.☆24Apr 5, 2023Updated 3 years ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- The JuliaGPU landing page.☆21May 5, 2026Updated 2 months ago
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 11 years ago