COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is available under the MIT license.
☆20Oct 29, 2019Updated 6 years ago
Alternatives and similar repositories for cobradb
Users that are interested in cobradb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The BiGG Models website server☆91Nov 7, 2019Updated 6 years ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 2 months ago
- memote – the genome-scale metabolic model test suite☆149Aug 14, 2025Updated 11 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- The OBC Software to be ran on-board the AcubeSAT nanosatellite☆15Nov 9, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 2 months ago
- Protein Purification☆11Dec 7, 2016Updated 9 years ago
- A Flow-based Variational Autoencoder for Molecule Generation☆10Feb 21, 2022Updated 4 years ago
- A Qiime plugin for MICOM.☆10Updated this week
- A Python framework for structural systems biology☆109Dec 7, 2020Updated 5 years ago
- Bremges et al. (2015). GigaScience, 4:33.☆12Dec 29, 2023Updated 2 years ago
- Learning Ontologies Via Embeddings☆12Jul 6, 2023Updated 3 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 6 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- COBRApy is a package for constraint-based modeling of metabolic networks.☆578Updated this week
- DNN-DTIs: improved drug-target interactions prediction using XGBoost feature selection and deep neural network☆12Mar 5, 2021Updated 5 years ago
- a minimal String type for Julia that allows for efficient string representation and transfer☆22Apr 23, 2026Updated 3 months ago
- CarveMe: genome-scale metabolic model reconstruction☆213Sep 12, 2025Updated 10 months ago
- ADCS simulations for the AcubeSAT nanosatellite☆15Oct 6, 2025Updated 9 months ago
- The java implementation of the MMTF API, decoder and encoder.☆12Dec 19, 2025Updated 7 months ago
- ☆14Dec 10, 2018Updated 7 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package to study microbial communities using metabolic modeling.☆134Updated this week
- ☆16Nov 26, 2021Updated 4 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 10 years ago
- Predict All Links In Ecological Networks☆13Dec 9, 2021Updated 4 years ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- ☆17Aug 22, 2023Updated 2 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆19Feb 29, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- Lookup Latin/Greek vocabulary from the command line using Python/Beautiful Soup.☆15Dec 30, 2025Updated 6 months ago
- Shiny app to explore structural approach to species coexistence☆11Dec 16, 2022Updated 3 years ago
- Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.☆24Apr 5, 2023Updated 3 years ago
- Repository of standardized biological experimental data and metadata☆16Jan 9, 2025Updated last year
- The JuliaGPU landing page.☆21Jul 7, 2026Updated 2 weeks ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago