SBRG / cobradb
COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is available under the MIT license.
☆20Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for cobradb
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆34Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆18Updated 2 weeks ago
- The BiGG Models website server☆80Updated 5 years ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- ☆22Updated 4 years ago
- D3.js based visualizations of cobrapy metabolic models☆41Updated 4 years ago
- framed: a metabolic modeling package for python☆25Updated 5 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 3 weeks ago
- Computation of Microbial Ecosystems in Time and Space☆19Updated 2 weeks ago
- Curation and analysis of metabolic models☆34Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆16Updated 6 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated last year
- ReFramed: metabolic modeling package☆56Updated 3 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆46Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆21Updated 3 weeks ago
- Reconstruction algorithms for Python☆23Updated 3 weeks ago
- Dynamic Flux Balance analysis in Python☆11Updated 8 years ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆18Updated 6 months ago
- Metabolic Engineering Workbench☆37Updated 5 months ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆25Updated last year
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Build and test new apps for the KBase platform☆27Updated 6 months ago
- Codon usage tables in code-friendly format + Python bindings☆35Updated 2 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆22Updated 2 years ago
- ☆22Updated last year