Alternatives and similar repositories for python-libsbml:

Users that are interested in python-libsbml are comparing it to the libraries listed below

• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated 8 months ago
• SBRG / MASSpy
  ☆22Updated 2 years ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆13Updated 2 years ago
• draeger-lab / SBSCL
  The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the …
  ☆20Updated last month
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated last year
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated last year
• copasi / basico
  A simplified python interface to COPASI.
  ☆19Updated 3 weeks ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆13Updated 2 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 2 weeks ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆11Updated 4 months ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆23Updated last year
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆39Updated last month
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆18Updated 2 months ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 8 years ago
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 5 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆28Updated 11 months ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆44Updated 4 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆14Updated last year
• SBRG / bigg_models
  The BiGG Models website server
  ☆80Updated 5 years ago
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆31Updated last year
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆47Updated last month
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated last year
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆37Updated 9 months ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆23Updated this week
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆19Updated 2 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆34Updated last year