jclachance / BOFdat
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
☆26Updated last year
Related projects: ⓘ
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆34Updated 2 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆67Updated 3 weeks ago
- ReFramed: metabolic modeling package☆53Updated last month
- Python package to study microbial communities using metabolic modeling.☆89Updated last week
- memote – the genome-scale metabolic model test suite☆126Updated 8 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆53Updated this week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆33Updated 5 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆100Updated this week
- CarveMe: genome-scale metabolic model reconstruction☆149Updated 2 weeks ago
- Computation of Microbial Ecosystems in Time and Space☆19Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆94Updated 3 weeks ago
- The BiGG Models website server☆78Updated 4 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 4 months ago
- ☆22Updated 4 years ago
- Enzyme-constrained genome-scale models in python☆25Updated 10 months ago
- D3.js based visualizations of cobrapy metabolic models☆37Updated 4 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆34Updated 3 weeks ago
- The generic genome-scale metabolic model of Homo sapiens☆95Updated this week
- Analysis of ensembles of metabolic network reconstructions☆19Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆24Updated 5 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 11 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated last month
- Python package for building and analyzing models using ModelSEED☆17Updated last month
- A python toolbox for 13C metabolic flux analysis☆18Updated 2 weeks ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆44Updated 3 weeks ago
- A container for all enzyme constrained models created by GECKO.☆10Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆56Updated 4 years ago
- Models, design algorithms, and other software related to Salis lab publications☆21Updated 3 weeks ago
- A collection of M models downloaded from published studies☆15Updated 8 years ago
- Degenerate Codon Design☆12Updated 4 years ago