jclachance / BOFdatLinks
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
☆27Updated 2 years ago
Alternatives and similar repositories for BOFdat
Users that are interested in BOFdat are comparing it to the libraries listed below
Sorting:
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated 2 weeks ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆119Updated 3 weeks ago
- The BiGG Models website server☆85Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- ReFramed: metabolic modeling package☆62Updated 2 months ago
- D3.js based visualizations of cobrapy metabolic models☆49Updated 5 years ago
- The generic genome-scale metabolic model of Homo sapiens☆123Updated 2 months ago
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆64Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆114Updated last week
- CarveMe: genome-scale metabolic model reconstruction☆187Updated 2 months ago
- Python package for building and analyzing models using ModelSEED☆24Updated 7 months ago
- A Python framework for structural systems biology☆110Updated 5 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆209Updated this week
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 7 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Python package to study microbial communities using metabolic modeling.☆113Updated last week
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 5 months ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆29Updated 2 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last month
- A collection of M models downloaded from published studies☆17Updated 9 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 9 months ago
- Webserver and command line tool for annotating engineered plasmids☆134Updated 4 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- antiSMASH☆236Updated 2 weeks ago