Alternatives and similar repositories for cobrapy

Users that are interested in cobrapy are comparing it to the libraries listed below

• opencobra / cobratoolbox
  The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
  ☆263Updated this week
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆309Updated 2 weeks ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆110Updated 4 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆118Updated 2 years ago
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆225Updated 11 months ago
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆358Updated 2 weeks ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆135Updated last year
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆297Updated last year
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆375Updated 2 weeks ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆120Updated 2 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• Edinburgh-Genome-Foundry / DnaFeaturesViewer
  Python library to plot DNA sequence features (e.g. from Genbank files)
  ☆646Updated last month
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆182Updated this week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• tanghaibao / goatools
  Python library to handle Gene Ontology (GO) terms
  ☆845Updated 2 months ago
• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆688Updated 2 years ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆581Updated 9 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆14Updated 5 months ago
• biotite-dev / biotite
  A comprehensive library for computational molecular biology
  ☆835Updated this week
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆201Updated 2 months ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆478Updated 2 months ago
• scikit-bio / scikit-bio
  scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…
  ☆955Updated 2 weeks ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆183Updated 2 weeks ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated 2 months ago
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆13Updated 3 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆122Updated 3 weeks ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 2 months ago
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆40Updated 4 months ago
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,023Updated last week