opencobra / cobrapyLinks
COBRApy is a package for constraint-based modeling of metabolic networks.
☆528Updated last week
Alternatives and similar repositories for cobrapy
Users that are interested in cobrapy are comparing it to the libraries listed below
Sorting:
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆270Updated last week
- Access to Biological Web Services from Python.☆324Updated this week
- The consensus GEM for Saccharomyces cerevisiae☆114Updated last week
- DNA plotting library for Python☆300Updated last year
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆662Updated 5 months ago
- Build, share, and embed visualizations of metabolic pathways.☆228Updated last year
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆209Updated last week
- The BiGG Models website server☆85Updated 6 years ago
- HMMER: biological sequence analysis using profile HMMs☆389Updated 2 months ago
- Python library to handle Gene Ontology (GO) terms☆873Updated 2 months ago
- The ViennaRNA Package☆374Updated this week
- The generic genome-scale metabolic model of Homo sapiens☆123Updated 3 months ago
- Python framework for Systems Biology modeling☆189Updated 4 months ago
- Efficient pythonic random access to fasta subsequences☆478Updated 3 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Scripts to download genomes from the NCBI FTP servers☆1,051Updated 4 months ago
- Automatically exported from code.google.com/p/cdhit☆709Updated 3 years ago
- A container for all enzyme constrained models created by GECKO.☆15Updated 3 years ago
- Syntax highlighting for computational biology☆269Updated 2 years ago
- Native python implementation of SBOL 3.0 specification☆42Updated 8 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆870Updated 2 weeks ago
- Prodigal Gene Prediction Software☆517Updated last year
- A Python framework for structural systems biology☆110Updated 5 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 9 months ago
- Remote protein homology detection suite.☆602Updated 3 months ago
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆992Updated 2 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆397Updated 3 months ago
- Gene cluster comparison figure generator☆623Updated last year