SED-ML / KiSAO
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
☆10Updated 4 months ago
Alternatives and similar repositories for KiSAO:
Users that are interested in KiSAO are comparing it to the libraries listed below
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 5 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 7 months ago
- Python utilities for SBML☆41Updated 3 weeks ago
- ☆18Updated last week
- cy3sbml: SBML for Cytoscape 3☆14Updated last month
- A simplified python interface to COPASI.☆20Updated 2 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- Rule-based modeling framework☆61Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated this week
- libRoadRunner: A high-performance SBML simulator☆47Updated 2 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated 11 months ago
- ☆14Updated 3 months ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆105Updated 2 weeks ago
- Schema for chemistry ontology classes☆17Updated 9 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆25Updated this week
- Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wr…☆15Updated 2 weeks ago
- Repository for libCellML development.☆17Updated 4 months ago
- Python package for working with PEtab files☆14Updated 2 weeks ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆16Updated 6 months ago
- Python Environment for Modeling and Simulating Biological Systems☆114Updated 2 weeks ago
- A place for all knowledge regarding Research Data Management (RDM) in Chemistry☆11Updated 3 weeks ago
- 👜 Easily pick a place to store data for your Python code.☆35Updated 2 months ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆47Updated this week
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 3 years ago
- Use ontology terms in your Python application☆19Updated 2 months ago
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compo…☆47Updated 2 years ago
- Modeling toolkit for biochemical simulation☆74Updated 2 months ago