matthiaskoenig / dfbaLinks
Encoding Dynamic Flux Balance Analysis in SBML
☆12Updated 5 years ago
Alternatives and similar repositories for dfba
Users that are interested in dfba are comparing it to the libraries listed below
Sorting:
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- The BiGG Models website server☆83Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆23Updated 3 weeks ago
- Python utilities for SBML☆41Updated 2 weeks ago
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 2 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated 2 weeks ago
- Rule-based modeling framework☆65Updated 3 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Metabolic Engineering Workbench☆40Updated last year
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Curation and analysis of metabolic models☆35Updated 2 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 7 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 3 weeks ago
- ☆22Updated 5 years ago
- ☆25Updated 2 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆113Updated this week
- libRoadRunner: A high-performance SBML simulator☆51Updated 2 months ago
- Whole Cell Model of E. coli☆28Updated last week
- A route planner for DNA assembly☆36Updated 4 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 5 months ago
- 🎺 Plot DNA digestion band patterns with Python☆20Updated 4 months ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last month
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- Release of the whole cell E. coli model.☆68Updated 9 months ago