Encoding Dynamic Flux Balance Analysis in SBML
☆12Sep 16, 2020Updated 5 years ago
Alternatives and similar repositories for dfba
Users that are interested in dfba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python utilities for SBML☆41Jan 22, 2026Updated 2 months ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 2 months ago
- Dynamic Flux Balance analysis in Python☆11Jan 22, 2016Updated 10 years ago
- Python library for fitting massive mixture models using DP priors and GPU computation.☆23Apr 7, 2016Updated 9 years ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆41Mar 11, 2026Updated last week
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Jun 13, 2023Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Aug 21, 2024Updated last year
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆25Jul 15, 2024Updated last year
- Python package for working with PEtab files☆16Updated this week
- A container for all enzyme constrained models created by GECKO.☆16Jul 4, 2022Updated 3 years ago
- A multi-reference network annotation tool to support omics analysis☆12May 31, 2022Updated 3 years ago
- Convert latex to svg☆12Oct 26, 2022Updated 3 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆63Feb 25, 2026Updated 3 weeks ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆24Mar 15, 2018Updated 8 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Dec 2, 2024Updated last year
- ☆11May 12, 2017Updated 8 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 8 years ago
- Model selection for PEtab☆14Mar 13, 2026Updated last week
- ☆10Sep 29, 2023Updated 2 years ago
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- Python library for SBGN☆11Mar 12, 2026Updated last week
- Zeobuilder is an extensible GUI-toolkit for molecular model construction.☆13Feb 15, 2019Updated 7 years ago
- Python package for building and analyzing models using ModelSEED☆26Feb 11, 2026Updated last month
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆123Mar 4, 2026Updated 2 weeks ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆54Mar 12, 2026Updated last week
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Eurorack projects☆13Jun 5, 2015Updated 10 years ago
- The official PySCeS project source code repository.☆40Updated this week
- A web application to visualize and edit pathway models☆60Updated this week
- プログラミング演習1/実践データサイエンス☆11Mar 8, 2026Updated 2 weeks ago
- ☆32Feb 21, 2026Updated last month
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- A library for converting molecular topologies☆13May 20, 2015Updated 10 years ago
- Bayesian inference of conformational populations☆13Jun 11, 2025Updated 9 months ago
- ☆10Dec 4, 2019Updated 6 years ago