Alternatives and similar repositories for dfba

Users that are interested in dfba are comparing it to the libraries listed below

• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆131Updated 2 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated 2 weeks ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last month
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆124Updated 3 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆36Updated 2 years ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆41Updated last year
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 10 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 6 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆62Updated last month
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆24Updated this week
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆34Updated 2 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆34Updated 3 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆66Updated 8 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆123Updated last week
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆191Updated 6 months ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆15Updated 2 weeks ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• eladnoor / component-contribution
  Standard reaction Gibbs energy estimation for biochemical reactions
  ☆19Updated 7 years ago
• EBI-BioModels / SBO
  The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…
  ☆11Updated 2 years ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 6 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated last year
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 5 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆76Updated last year
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆23Updated 7 months ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated 2 months ago
• latendre / PythonCyc
  ☆23Updated 5 years ago