Alternatives and similar repositories for dfba:

Users that are interested in dfba are comparing it to the libraries listed below

• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated last year
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆39Updated last month
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆13Updated 2 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 3 months ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆19Updated 2 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated last year
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 4 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated this week
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated last year
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆11Updated 5 months ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 5 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆23Updated last year
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆13Updated 2 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• Edinburgh-Genome-Foundry / SBOL-Visual-CSS
  Draw genetic elements with HTML & CSS
  ☆16Updated 7 years ago
• opencobra / COBRA.jl
  High-level, high-performance, constraint-based reconstruction and analysis in Julia
  ☆62Updated last year
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆43Updated this week
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 8 months ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆19Updated 2 years ago
• SBRG / MASSpy
  ☆22Updated 2 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆50Updated 2 months ago
• Edinburgh-Genome-Foundry / BandWitch
  💫 Computer-aided DNA assembly validation and identification from restriction digests.
  ☆15Updated 2 years ago
• gwh120104 / deepmetabolism
  DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
  ☆31Updated 7 years ago
• Edinburgh-Genome-Foundry / Primavera
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆33Updated 2 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆60Updated 4 months ago