colomoto / colomoto-dockerLinks
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
☆26Updated this week
Alternatives and similar repositories for colomoto-docker
Users that are interested in colomoto-docker are comparing it to the libraries listed below
Sorting:
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated 3 months ago
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 4 months ago
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆13Updated 4 months ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆9Updated 5 years ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated last month
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 10 months ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆13Updated last week
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆42Updated this week
- Data Integration tool utilizing network information for predictive analyses☆16Updated 3 weeks ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆26Updated this week
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Updated 2 years ago
- The GenePattern Server web application☆36Updated 3 weeks ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆24Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- Single cell RNA Seq data analysis with quantitative phenotypes☆14Updated 4 years ago
- Python module to analyse CRISPR-based libraries☆13Updated 4 years ago
- Python-based framework for computational immunomics☆40Updated 3 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated last year
- Short course using RStudio for biological data analysis☆14Updated 2 years ago
- ☆13Updated this week
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- Unified knowledge-driven network inference from omics data☆41Updated 2 weeks ago
- Spatial Transcriptomics Dashboard☆27Updated last year
- Python client for the OmniPath web service☆44Updated last week