colomoto / colomoto-dockerLinks
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
☆27Updated 3 weeks ago
Alternatives and similar repositories for colomoto-docker
Users that are interested in colomoto-docker are comparing it to the libraries listed below
Sorting:
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated 4 months ago
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 4 months ago
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated last week
- The GenePattern Server web application☆36Updated last month
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆13Updated 4 months ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆9Updated 5 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Updated 2 years ago
- "Independent Component Analysis of BIg Omics Data"☆13Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 10 months ago
- ☆62Updated 3 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆13Updated last month
- Spatial Transcriptomics Dashboard☆27Updated last year
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- ☆19Updated 2 years ago
- GeneNetwork (2nd generation)☆35Updated this week
- Bayesian MCMC matrix factorization algorithm☆69Updated last month
- Fit generalized linear models in python.☆28Updated 2 years ago
- Boolean Network Modeling☆40Updated 5 years ago
- Single cell RNA Seq data analysis with quantitative phenotypes☆14Updated 4 years ago
- piano - An R/Bioconductor package for gene set analysis☆13Updated 2 years ago
- Reactome Pathway Analysis☆42Updated 2 months ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated 2 months ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated last year
- Python client for the OmniPath web service☆45Updated last month
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated 2 years ago
- A package that provides data analysis pipeline for flow cytometry.☆79Updated 3 months ago