Alternatives and similar repositories for colomoto-docker

Users that are interested in colomoto-docker are comparing it to the libraries listed below

• bnediction / mpbn
  Brief Python implementation of Most Permissive Boolean Networks
  ☆19Updated 7 months ago
• colomoto / bioLQM
  toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
  ☆19Updated 2 weeks ago
• blekhmanlab / rxivist
  API providing access to papers and authors scraped from biorxiv.org
  ☆57Updated 2 years ago
• greenelab / covid19-review
  A collaborative review of the emerging COVID-19 literature. Join the chat here:
  ☆117Updated last year
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 months ago
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆25Updated last year
• bnediction / scBoolSeq
  scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
  ☆13Updated 2 weeks ago
• bnediction / bonesis
  Synthesis and Reprogramming of Most Permissive Boolean Networks
  ☆13Updated last week
• ialbert / booleannet
  Boolean Network Modeling
  ☆40Updated 5 years ago
• pauleve / pint
  Static analyzer for dynamics of Automata Networks
  ☆12Updated 4 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆45Updated 4 years ago
• sybila / biodivine-boolean-models
  A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
  ☆13Updated last month
• bio-tools / biotoolsSchema
  biotoolsSchema : Tool description data model for computational tools in life sciences
  ☆39Updated last week
• LabBandSB / BIODICA
  "Independent Component Analysis of BIg Omics Data"
  ☆13Updated 2 years ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• netZoo / netZooPy
  netZooPy is a network biology package implemented in Python.
  ☆89Updated 2 months ago
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆25Updated last month
• bio-tools / biotoolsRegistry
  biotoolsregistry : discovery portal for bioinformatics
  ☆80Updated this week
• Snakemake-Profiles / pbs-torque
  ☆17Updated last year
• pwwang / plotnine-prism
  Prism themes for plotnine, inspired by ggprism.
  ☆15Updated 2 weeks ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆53Updated 6 years ago
• sysbio-curie / PROFILE
  Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper
  ☆11Updated 2 years ago
• genenetwork / genenetwork2
  GeneNetwork (2nd generation)
  ☆36Updated this week
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 2 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆66Updated last year
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last week
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆44Updated 5 years ago
• rnabioco / practical-data-analysis
  Short course using RStudio for biological data analysis
  ☆14Updated 3 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month