Alternatives and similar repositories for antimony

Users that are interested in antimony are comparing it to the libraries listed below

• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 7 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 months ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆25Updated 2 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆55Updated 2 weeks ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆130Updated last month
• SED-ML / KiSAO
  Ontology of algorithms for analyzing biological models, their parameters, and their outputs
  ☆11Updated last year
• Luthey-Schulten-Lab / Lattice_Microbes
  ☆33Updated 5 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆121Updated 2 weeks ago
• raim / SBML_odeSolver
  a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…
  ☆23Updated 7 years ago
• EBI-BioModels / SBO
  The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…
  ☆11Updated 2 years ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆51Updated last year
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last month
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆29Updated last month
• sbmlteam / libsbml
  LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…
  ☆54Updated last week
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆26Updated last month
• CiaranWelsh / pycotools3
  A Python toolbox for COPASI
  ☆13Updated last year
• StochSS / StochKit
  StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
  ☆17Updated 5 years ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 5 years ago
• althonos / pubchem.rs
  Rust data structures and client for the PubChem REST API
  ☆14Updated 2 years ago
• ialbert / booleannet
  Boolean Network Modeling
  ☆40Updated 5 years ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆42Updated this week
• cellml / libcellml
  Repository for libCellML development.
  ☆17Updated last month
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆61Updated 3 weeks ago
• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆29Updated 9 months ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆81Updated 11 months ago
• RuleWorld / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆14Updated 4 months ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated 2 weeks ago