Alternatives and similar repositories for antimony

Users that are interested in antimony are comparing it to the libraries listed below

• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 5 months ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 weeks ago
• Luthey-Schulten-Lab / Lattice_Microbes
  ☆32Updated 3 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 3 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆24Updated 3 weeks ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆53Updated 2 weeks ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆50Updated 11 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆114Updated this week
• sbmlteam / libsbml
  LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…
  ☆53Updated 2 weeks ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 5 years ago
• SED-ML / KiSAO
  Ontology of algorithms for analyzing biological models, their parameters, and their outputs
  ☆11Updated 10 months ago
• CiaranWelsh / pycotools3
  A Python toolbox for COPASI
  ☆13Updated last year
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• msneddon / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆19Updated last year
• RuleWorld / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆14Updated 2 months ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated this week
• StochSS / StochKit
  StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
  ☆17Updated 5 years ago
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆42Updated 4 months ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated 2 months ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆79Updated 9 months ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• jakobandersen / mod
  ☆39Updated last week
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last week
• tlubitz / parameter_balancing
  Software tool for metabolic modelling in Systems Biology
  ☆10Updated 4 years ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆42Updated last week
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆29Updated last week