sys-bio / antimonyLinks
☆18Updated last week
Alternatives and similar repositories for antimony
Users that are interested in antimony are comparing it to the libraries listed below
Sorting:
- Rule-based modeling framework☆63Updated last month
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 10 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 months ago
- libRoadRunner: A high-performance SBML simulator☆51Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Updated 7 months ago
- Python utilities for SBML☆41Updated last month
- Python Environment for Modeling and Simulating Biological Systems☆119Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆112Updated last week
- A Python toolbox for COPASI☆13Updated last year
- Whole-cell modeling tutorials☆16Updated 5 years ago
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆22Updated 7 years ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆51Updated 2 weeks ago
- A simplified python interface to COPASI.☆21Updated last week
- Repository for libCellML development.☆17Updated 7 months ago
- ☆32Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last week
- Modeling toolkit for biochemical simulation☆75Updated 5 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated last week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated this week
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆16Updated 5 years ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆49Updated 8 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated last year
- The official PySCeS project source code repository.☆38Updated 2 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 3 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- A tool for creating Python implementations of SBML models.☆14Updated 2 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated last week