☆22Aug 28, 2026Updated this week
Alternatives and similar repositories for antimony
Users that are interested in antimony are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- libRoadRunner: A high-performance SBML simulator☆62Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Mar 9, 2026Updated 5 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- Python Environment for Modeling and Simulating Biological Systems☆143Updated this week
- Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailsc…☆10Aug 25, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simplified python interface to COPASI.☆28Jun 15, 2026Updated 2 months ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆55Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 8 months ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago
- Rule-based modeling framework☆70Aug 12, 2026Updated 2 weeks ago
- Use ontology terms in your Python application☆21Jun 6, 2025Updated last year
- Whole-cell modeling tutorials☆18Jun 26, 2020Updated 6 years ago
- The new Reactome REST API to access the data☆11May 22, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Machine learning experiments for CheckMyBlob☆14Jun 14, 2018Updated 8 years ago
- A domain-specific language that allows the expression or protein interactions that can be used to build executable models.☆23Dec 13, 2022Updated 3 years ago
- A Python toolbox for COPASI☆13Jun 5, 2024Updated 2 years ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Updated this week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Jul 14, 2026Updated last month
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆64Jun 22, 2026Updated 2 months ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12Jul 22, 2026Updated last month
- Simply Typed Lambda Calculus with de Bruijn indices☆19Mar 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- Python utilities for SBML☆41Aug 6, 2026Updated 3 weeks ago
- SlicerModalityConverter is an open-source 3D Slicer extension designed for medical image-to-image (I2I) translation. The ModalityConverte…☆19Jul 17, 2026Updated last month
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated this week
- SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit☆43Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 5 years ago
- ☆17Aug 10, 2026Updated 2 weeks ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆16Aug 18, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆128Aug 18, 2026Updated last week
- ☆11Aug 8, 2026Updated 3 weeks ago
- Public repository of Google Colab notebooks to use with Phenix☆12Mar 19, 2025Updated last year
- The extension for Sphinx documentation projects that handles redirects for moved pages. Based on the its configuration, the extension gen…☆16Feb 27, 2026Updated 6 months ago
- A library of to show data (in browser, evcxr_jupyter) as table, chart...☆29Apr 14, 2025Updated last year
- Docker images for Chaste☆13Jul 21, 2026Updated last month
- Example of clingo usage on website as a client-side JS program☆14Aug 27, 2019Updated 7 years ago