A collection of M models downloaded from published studies
☆17Feb 18, 2016Updated 10 years ago
Alternatives and similar repositories for m_model_collection
Users that are interested in m_model_collection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Dec 26, 2022Updated 3 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Apr 17, 2026Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Jan 11, 2019Updated 7 years ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated last week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Jan 28, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A python toolbox for 13C metabolic flux analysis☆23Jul 7, 2025Updated 9 months ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 2 months ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- JBEI Quantitative Metabolic Modeling library☆13Feb 7, 2020Updated 6 years ago
- The standard for open-source GEMs on GitHub☆21Oct 26, 2023Updated 2 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆13Updated this week
- Build, share, and embed visualizations of metabolic pathways.☆236Aug 15, 2024Updated last year
- Python utilities for SBML☆41Apr 23, 2026Updated last week
- A collection of tools to download and process KEGG database☆41Jun 4, 2018Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- Single sample pathway analysis tools for omics data☆14Nov 9, 2024Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 2 years ago
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- Python package for building and analyzing models using ModelSEED☆27Feb 11, 2026Updated 2 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆50Mar 23, 2026Updated last month
- Python package of codon usage bias analysis tools☆21Apr 25, 2026Updated last week
- The BiGG Models website server☆89Nov 7, 2019Updated 6 years ago
- ☆15Mar 18, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python library for SBGN☆11Apr 21, 2026Updated last week
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- A python project for analysis of codon usage for gene or genome analysis☆25Nov 10, 2024Updated last year
- A Python MPI Pool☆17Jun 21, 2020Updated 5 years ago
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 8 months ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆283Updated this week
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- SBOL Designer Project☆31Jun 4, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Chrome extension for edX and XueTangX to download subtitle file from its page☆13Jan 2, 2015Updated 11 years ago
- A Docker-based Data Science cookiecutter (for myself)☆13May 3, 2021Updated 5 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- DeepECtransformer☆30Oct 20, 2023Updated 2 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 2 months ago
- Import SBML dynamic models into the Julia SciML ecosystem for jump (Gillespie), SDE, and ODE simulations☆24Updated this week
- ☆11Feb 20, 2026Updated 2 months ago