opencobra / m_model_collection
A collection of M models downloaded from published studies
☆16Updated 9 years ago
Alternatives and similar repositories for m_model_collection:
Users that are interested in m_model_collection are comparing it to the libraries listed below
- ReFramed: metabolic modeling package☆58Updated 7 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 2 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 6 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 7 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆59Updated last month
- Repository of tutorials for The COBRA Toolbox☆21Updated last week
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 10 months ago
- Computation of Microbial Ecosystems in Time and Space☆22Updated last week
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆20Updated 4 years ago
- Python package for building and analyzing models using ModelSEED☆22Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- The standard for open-source GEMs on GitHub☆19Updated last year
- ☆11Updated 5 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 5 months ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- ☆22Updated 4 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆107Updated last month
- Python toolbox for phenotype analysis of arrayed microbial colonies☆17Updated last year
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- Nanopore Plasmid Sequencing☆32Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆37Updated 2 weeks ago
- The BiGG Models website server☆81Updated 5 years ago
- A Pure-Python parser of HMMER3 output☆17Updated 5 months ago
- Making bioinformatics fun again☆65Updated 9 months ago