opencobra / m_model_collection
A collection of M models downloaded from published studies
☆15Updated 8 years ago
Related projects: ⓘ
- Python package for building and analyzing models using ModelSEED☆17Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆53Updated this week
- ReFramed: metabolic modeling package☆53Updated last month
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆33Updated 5 years ago
- Python toolbox for phenotype analysis of arrayed microbial colonies☆17Updated 7 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆34Updated 2 months ago
- ☆22Updated 4 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 11 months ago
- Python package to study microbial communities using metabolic modeling.☆89Updated last week
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆24Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆18Updated last week
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 4 months ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆19Updated 3 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆12Updated last month
- Computation of Microbial Ecosystems in Time and Space☆19Updated this week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆13Updated last year
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆12Updated 4 years ago
- framed: a metabolic modeling package for python☆26Updated 4 years ago
- ☆12Updated 5 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆32Updated this week
- Mackinac: A bridge between ModelSEED and COBRApy☆16Updated 6 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Updated 7 years ago
- Nanopore Plasmid Sequencing☆30Updated 11 months ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- The tRNA adaptation index☆15Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆25Updated 10 months ago
- A Pure-Python parser of HMMER3 output☆17Updated 8 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆44Updated 3 weeks ago