opencobra / m_model_collectionLinks
A collection of M models downloaded from published studies
☆17Updated 9 years ago
Alternatives and similar repositories for m_model_collection
Users that are interested in m_model_collection are comparing it to the libraries listed below
Sorting:
- ReFramed: metabolic modeling package☆62Updated 2 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆64Updated this week
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆119Updated 3 weeks ago
- Python package for building and analyzing models using ModelSEED☆24Updated 7 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆113Updated last week
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated 2 weeks ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- ☆10Updated 6 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Updated 6 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆117Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last month
- The tRNA adaptation index☆19Updated 7 months ago
- D3.js based visualizations of cobrapy metabolic models☆49Updated 5 years ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- Nanopore Plasmid Sequencing☆34Updated 2 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago
- Making bioinformatics fun again☆74Updated last month
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆62Updated 5 years ago
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs☆54Updated last year
- sensitive and precise assembly of short sequencing reads☆161Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated last week
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Python toolbox for phenotype analysis of arrayed microbial colonies☆17Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- ☆23Updated 5 years ago
- A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipu…☆85Updated last year
- Enzyme-constrained genome-scale models in python☆29Updated 2 years ago