biosustain / cameoLinks
cameo - computer aided metabolic engineering & optimization
☆118Updated 2 years ago
Alternatives and similar repositories for cameo
Users that are interested in cameo are comparing it to the libraries listed below
Sorting:
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- The BiGG Models website server☆83Updated 5 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆135Updated last week
- A Python framework for structural systems biology☆109Updated 4 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 5 months ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆76Updated 3 months ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆188Updated last week
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆63Updated 3 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆57Updated 3 weeks ago
- ReFramed: metabolic modeling package☆59Updated 3 months ago
- WebLogo 3: Sequence Logos redrawn☆153Updated 3 months ago
- Metabolic Engineering Workbench☆40Updated last year
- The consensus GEM for Saccharomyces cerevisiae☆111Updated 4 months ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- ☆22Updated 4 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated last month
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 11 months ago
- Release of the whole cell E. coli model.☆68Updated 8 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 3 months ago
- General low-level API☆50Updated 3 years ago
- nucleic acid folding☆98Updated last week
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆24Updated 3 years ago
- A container for all enzyme constrained models created by GECKO.☆14Updated 3 years ago