draeger-lab / SBSCLLinks
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
☆25Updated 3 weeks ago
Alternatives and similar repositories for SBSCL
Users that are interested in SBSCL are comparing it to the libraries listed below
Sorting:
- Find common blocks and differences between DNA sequences☆42Updated last week
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15Updated 5 months ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 7 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 5 months ago
- A route planner for DNA assembly☆36Updated 6 months ago
- 🎺 Plot DNA digestion band patterns with Python☆20Updated 6 months ago
- repository-based plasmid design☆29Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 6 months ago
- MView extracts and reformats the results of a sequence database search or multiple alignment.☆32Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆58Updated 3 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 3 years ago
- locally query the ncbi taxonomy☆39Updated 2 years ago
- A BioJS viewer for protein sequence features☆51Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆29Updated 2 years ago
- biotoolsregistry: discovery portal for bioinformatics☆81Updated last week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 9 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- Python package to query and analyse UniProt☆25Updated 5 years ago
- Multiple sequence alignment visualizer☆30Updated 2 years ago
- Codon usage tables in code-friendly format + Python bindings☆39Updated 6 months ago
- Efficiently keep track of changes to genomes☆38Updated last year
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 7 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Repository of tutorials for The COBRA Toolbox☆23Updated last week
- Deep learning embedding for nucleotide sequences☆19Updated 7 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆13Updated 3 years ago