The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
☆26Sep 22, 2026Updated this week
Alternatives and similar repositories for SBSCL
Users that are interested in SBSCL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆43Updated this week
- refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).☆22Updated this week
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆21Oct 8, 2024Updated last year
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- The BiGG Models website server☆93Nov 7, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆21Jun 26, 2023Updated 3 years ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆17Updated this week
- ☆13Updated this week
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- Draw genetic elements with HTML & CSS☆19May 6, 2026Updated 4 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Updated this week
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…☆67Apr 7, 2026Updated 5 months ago
- Python utilities for SBML☆42Updated this week
- A simulation engine for compartmental models☆17Sep 4, 2026Updated 3 weeks ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Sep 11, 2026Updated 2 weeks ago
- ☆17Jul 27, 2026Updated 2 months ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Sep 18, 2026Updated last week
- ☆20Jun 23, 2020Updated 6 years ago
- ☆13Aug 10, 2026Updated last month
- Chat offline with open-source LLMs like deepseek-r1, nemotron, qwen, llama and more all through a simple R package powered by Shiny and O…☆22Mar 12, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python3 Toolkit for ML-assisted inference, optimization and parameter exploration.☆16May 15, 2023Updated 3 years ago
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Updated this week
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Updated this week
- Pathogenfinder2☆19Apr 20, 2026Updated 5 months ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆237May 12, 2026Updated 4 months ago
- Command line tool for Wave containers provisioning service☆19Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 6 months ago
- Study group for Hadoop, Python and analytics☆13Feb 10, 2017Updated 9 years ago
- Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for pre…☆16Sep 1, 2026Updated 3 weeks ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆47Oct 17, 2024Updated last year
- Open-source Deep Learning Framework for Allosteric Pocket Prediction☆17Jul 31, 2026Updated last month
- ☆25Feb 18, 2021Updated 5 years ago
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 5 years ago