A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
☆21Jun 26, 2023Updated 2 years ago
Alternatives and similar repositories for KEGGtranslator
Users that are interested in KEGGtranslator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 4 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 6 years ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆42May 11, 2026Updated 2 weeks ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated 2 months ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A yFiles-based editor for SBGN diagrams written in Kotlin☆13Apr 2, 2020Updated 6 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆15May 22, 2026Updated last week
- The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the …☆25Mar 26, 2026Updated 2 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Jan 28, 2025Updated last year
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆19Oct 8, 2024Updated last year
- Offline, CRDT collaboration demo!☆14Aug 14, 2022Updated 3 years ago
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated last year
- UBC CPSC 330: Applied Machine Learning (2025W1)☆25Dec 9, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Sep 11, 2024Updated last year
- A project to capture biological pathway data from academic papers☆29Mar 24, 2025Updated last year
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21May 4, 2026Updated 3 weeks ago
- Fostering open source collaboration with technical writers.☆10Aug 17, 2019Updated 6 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 20, 2026Updated last week
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆52Nov 4, 2025Updated 6 months ago
- D3.js based visualizations of cobrapy metabolic models☆51Mar 10, 2020Updated 6 years ago
- Code that illustrates some of owlready2 functionality to parse an owl file☆11Feb 7, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Apr 20, 2020Updated 6 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- Cytoscape 3 implementation bundles.☆42May 2, 2026Updated 3 weeks ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- The BiGG Models website server☆90Nov 7, 2019Updated 6 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 4 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- CNN BiGRU ensembled-method☆12Jul 30, 2018Updated 7 years ago
- Constraint-based Metabolic Modeling Course☆11Jul 25, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.☆15May 2, 2017Updated 9 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 6 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆17May 6, 2026Updated 3 weeks ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated last month
- ☆29Mar 16, 2023Updated 3 years ago