A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
☆21Jun 26, 2023Updated 3 years ago
Alternatives and similar repositories for KEGGtranslator
Users that are interested in KEGGtranslator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 4 years ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆42May 30, 2026Updated last month
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 7 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Updated this week
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the …☆25Jun 10, 2026Updated last month
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- ☆13Sep 11, 2024Updated last year
- memote – the genome-scale metabolic model test suite☆149Aug 14, 2025Updated 11 months ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆19Oct 8, 2024Updated last year
- Offline, CRDT collaboration demo!☆14Aug 14, 2022Updated 3 years ago
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated last year
- A project to capture biological pathway data from academic papers☆29Mar 24, 2025Updated last year
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Feb 29, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆52Mar 10, 2020Updated 6 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 2 months ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- The consensus GEM for Saccharomyces cerevisiae☆129Jul 1, 2026Updated 3 weeks ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Code that illustrates some of owlready2 functionality to parse an owl file☆11Feb 7, 2023Updated 3 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆54Nov 4, 2025Updated 8 months ago
- refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).☆21Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- UBC CPSC 330: Applied Machine Learning (2025W1)☆25Dec 9, 2025Updated 7 months ago
- Cytoscape 3 implementation bundles.☆43Jul 16, 2026Updated last week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆17May 14, 2023Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 2 months ago
- The BiGG Models website server☆91Nov 7, 2019Updated 6 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 6 months ago
- ☆14Feb 24, 2020Updated 6 years ago
- Constraint-based Metabolic Modeling Course☆11Jul 25, 2022Updated 4 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 7 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- ☆13Sep 24, 2025Updated 10 months ago
- Python package aimed at automatic identification of electron and hole transfer pathways in proteins.☆13Feb 17, 2026Updated 5 months ago