sbmlteam / sbml-test-suiteLinks
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
☆26Updated 3 weeks ago
Alternatives and similar repositories for sbml-test-suite
Users that are interested in sbml-test-suite are comparing it to the libraries listed below
Sorting:
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 11 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 3 months ago
- libRoadRunner: A high-performance SBML simulator☆51Updated 3 weeks ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆51Updated last month
- A tool for creating Python implementations of SBML models.☆14Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆113Updated last week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Updated 9 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- A Python toolbox for COPASI☆13Updated last year
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- Rule-based modeling framework☆64Updated 2 months ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last week
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 weeks ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- LibSBMLSim: A library for simulating SBML models☆13Updated 3 years ago
- Python utilities for SBML☆41Updated 2 months ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated last month
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated 2 years ago
- ☆18Updated 3 weeks ago
- Boolean Network Modeling☆40Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated this week
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆11Updated 8 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated 2 years ago
- Misc. utilities☆11Updated 6 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Core types and interfaces for BioJulia packages☆31Updated 6 years ago