sbmlteam / sbml-test-suite
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
☆23Updated last year
Alternatives and similar repositories for sbml-test-suite:
Users that are interested in sbml-test-suite are comparing it to the libraries listed below
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 4 months ago
- cy3sbml: SBML for Cytoscape 3☆13Updated 2 years ago
- libRoadRunner: A high-performance SBML simulator☆44Updated this week
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆45Updated 2 weeks ago
- A tool for creating Python implementations of SBML models.☆13Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 6 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆104Updated this week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- LibSBMLSim: A library for simulating SBML models☆13Updated 3 years ago
- Python utilities for SBML☆40Updated last month
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated last year
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆22Updated 6 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆23Updated this week
- Rule-based modeling framework☆61Updated 5 months ago
- 🧫 Read Flow Cytometry Standard (FCS) files in Julia☆17Updated 2 years ago
- Python package for working with PEtab files☆14Updated 2 months ago
- Core types and interfaces for BioJulia packages☆30Updated 6 years ago
- Repository of tutorials for The COBRA Toolbox☆20Updated 4 months ago
- Julia interface to ViennaRNA for RNA structure prediction and analysis☆22Updated 10 months ago
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆11Updated 7 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Updated 7 months ago
- Parsing MHC nomenclature in the wild☆16Updated 4 months ago
- Constraint-Based Reconstruction and EXascale Analysis☆44Updated 4 months ago