Alternatives and similar repositories for yeast-GEM

Users that are interested in yeast-GEM are comparing it to the libraries listed below

• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆71Updated 3 weeks ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆115Updated 2 weeks ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆82Updated 5 years ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆132Updated last year
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆112Updated 3 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 months ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆14Updated 3 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• tibbdc / ECMpy
  ☆13Updated 2 months ago
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆13Updated 2 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated last month
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆21Updated 9 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆130Updated 6 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆170Updated last month
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆25Updated 7 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆79Updated 2 weeks ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆42Updated 3 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆174Updated last month
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆32Updated 6 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆61Updated 4 months ago
• Yu-sysbio / Tutorials-of-metabolic-modeling
  代谢网络模型构建和使用实操
  ☆28Updated 2 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆143Updated last year
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆115Updated 2 years ago
• antismash / antismash
  antiSMASH
  ☆209Updated last week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆121Updated 3 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆244Updated last month