SysBioChalmers / yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
☆108Updated last month
Alternatives and similar repositories for yeast-GEM:
Users that are interested in yeast-GEM are comparing it to the libraries listed below
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 3 weeks ago
- The generic genome-scale metabolic model of Homo sapiens☆110Updated 2 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆108Updated 3 months ago
- memote – the genome-scale metabolic model test suite☆131Updated last year
- The BiGG Models website server☆81Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 2 months ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 2 months ago
- A container for all enzyme constrained models created by GECKO.☆12Updated 2 years ago
- Models, design algorithms, and other software related to Salis lab publications☆31Updated 5 months ago
- ReFramed: metabolic modeling package☆58Updated last week
- A python toolbox for 13C metabolic flux analysis☆20Updated 8 months ago
- Reconstruction algorithms for Python☆24Updated 6 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- CarveMe: genome-scale metabolic model reconstruction☆166Updated 3 weeks ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆124Updated 5 months ago
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 2 months ago
- 代谢网络模型构建和使用实操☆26Updated 2 years ago
- ☆9Updated last year
- WebLogo 3: Sequence Logos redrawn☆149Updated 4 months ago
- Metabolic Engineering Workbench☆40Updated 10 months ago
- Release of the whole cell E. coli model.☆65Updated 4 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆108Updated 2 years ago
- snakemake pipeline for creating trees from sequence sets☆76Updated last week
- BGC Detection and Classification Using Deep Learning☆140Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 11 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆54Updated 2 months ago