SysBioChalmers / yeast-GEMLinks
The consensus GEM for Saccharomyces cerevisiae
☆109Updated 3 months ago
Alternatives and similar repositories for yeast-GEM
Users that are interested in yeast-GEM are comparing it to the libraries listed below
Sorting:
- Toolbox for including enzyme constraints on a genome-scale model.☆76Updated 2 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- The BiGG Models website server☆83Updated 5 years ago
- The generic genome-scale metabolic model of Homo sapiens☆118Updated last month
- memote – the genome-scale metabolic model test suite☆133Updated last year
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 2 months ago
- WebLogo 3: Sequence Logos redrawn☆153Updated 2 months ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Software for the visualization of sequence-function relationships☆201Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆34Updated 8 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆135Updated 7 months ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆181Updated last week
- The ViennaRNA Package☆356Updated 8 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 4 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆42Updated 5 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆61Updated 2 months ago
- nucleic acid folding☆94Updated 11 months ago
- BGC Detection and Classification Using Deep Learning☆146Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆177Updated this week
- Protein 3D structure prediction pipeline☆82Updated last week
- a pipeline to build similarity maps of protein space☆35Updated 7 months ago
- snakemake pipeline for creating trees from sequence sets☆83Updated last month
- Degenerate Codon Design☆13Updated 5 years ago
- Deep networks for protein functional inference☆175Updated last month
- Multiple Protein Structure Alignment at Scale with FoldMason☆181Updated last week
- Cython bindings and Python interface to HMMER3.☆140Updated 3 weeks ago
- cameo - computer aided metabolic engineering & optimization☆117Updated 2 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆272Updated 4 months ago