Alternatives and similar repositories for yeast-GEM

Users that are interested in yeast-GEM are comparing it to the libraries listed below

• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated 3 weeks ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆122Updated 2 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆143Updated 3 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆118Updated last week
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated 2 weeks ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 6 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆14Updated 3 years ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆206Updated 5 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆48Updated 5 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆207Updated this week
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆72Updated 11 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆160Updated 11 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆121Updated 3 years ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆76Updated 3 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆287Updated 5 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆155Updated 2 years ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆254Updated 2 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆108Updated 3 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 6 months ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated 2 weeks ago
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆370Updated 3 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆89Updated this week
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆62Updated 2 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆133Updated 4 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated 3 weeks ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆148Updated last week