copasi / basico
A simplified python interface to COPASI.
☆20Updated last month
Alternatives and similar repositories for basico:
Users that are interested in basico are comparing it to the libraries listed below
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 5 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last month
- Python package for working with PEtab files☆14Updated last week
- Python Environment for Modeling and Simulating Biological Systems☆113Updated last month
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆104Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Python utilities for SBML☆40Updated last month
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 3 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- A python toolbox for 13C metabolic flux analysis☆20Updated 6 months ago
- cy3sbml: SBML for Cytoscape 3☆14Updated last week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 7 months ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 2 weeks ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- The official PySCeS project source code repository.☆38Updated 3 months ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated 3 weeks ago
- Symbolic Kinetic Models with Python☆31Updated last week
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆44Updated 4 months ago
- libRoadRunner: A high-performance SBML simulator☆46Updated 2 weeks ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated last month
- Rule-based modeling framework☆61Updated last week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated 10 months ago
- ☆18Updated this week
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 3 weeks ago
- Whole Cell Model of E. coli☆21Updated this week
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆51Updated last month
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Modeling toolkit for biochemical simulation☆74Updated 2 months ago