copasi / basico
A simplified python interface to COPASI.
☆20Updated 2 weeks ago
Alternatives and similar repositories for basico:
Users that are interested in basico are comparing it to the libraries listed below
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 3 weeks ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 6 months ago
- Python Environment for Modeling and Simulating Biological Systems☆116Updated last month
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Python package for working with PEtab files☆14Updated last week
- Enzyme-constrained genome-scale models in python☆26Updated last year
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 2 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆106Updated this week
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆54Updated 2 months ago
- Python utilities for SBML☆41Updated 2 weeks ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- A python toolbox for 13C metabolic flux analysis☆20Updated 8 months ago
- cy3sbml: SBML for Cytoscape 3☆14Updated last month
- Release of the whole cell E. coli model.☆65Updated 4 months ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 5 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 3 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 2 months ago
- ☆18Updated this week
- The official PySCeS project source code repository.☆38Updated this week
- The BiGG Models website server☆81Updated 5 years ago
- Symbolic Kinetic Models with Python☆32Updated last month
- ☆23Updated 2 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 8 months ago
- libRoadRunner: A high-performance SBML simulator☆48Updated 2 weeks ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated 3 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year