Alternatives and similar repositories for basico

Users that are interested in basico are comparing it to the libraries listed below

• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 months ago
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆29Updated last week
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆14Updated this week
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated this week
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last month
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆119Updated last week
• sys-bio / antimony
  ☆18Updated last week
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆112Updated this week
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆51Updated this week
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆182Updated 4 months ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆49Updated 8 months ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆63Updated last month
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 4 years ago
• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆29Updated 3 months ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated 10 months ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆38Updated 2 months ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆27Updated last week
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆69Updated 7 months ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆75Updated 5 months ago
• cellmodeller / CellModeller
  GPU-accelerated multicellular modelling framework
  ☆63Updated 2 months ago
• vivarium-collective / vivarium-core
  Core Interface and Engine for Vivarium 1.0
  ☆32Updated 7 months ago
• virtualcell / vcell
  Virtual Cell Framework
  ☆88Updated this week
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated this week
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆26Updated this week
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆12Updated 4 months ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆41Updated last week
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated 3 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago