Alternatives and similar repositories for moccasin

Users that are interested in moccasin are comparing it to the libraries listed below

• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 4 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last month
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sys-bio / antimony
  ☆18Updated last week
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated this week
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last month
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last year
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆25Updated last month
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆38Updated 3 weeks ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆49Updated last month
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆64Updated last week
• SED-ML / KiSAO
  Ontology of algorithms for analyzing biological models, their parameters, and their outputs
  ☆10Updated 6 months ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆107Updated last week
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆29Updated 2 weeks ago
• yaml2sbml-dev / yaml2sbml
  Tool to convert an ODE model specified in the YAML format to SBML.
  ☆12Updated last year
• sbgn / libsbgn
  Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
  ☆16Updated 7 months ago
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆14Updated 3 weeks ago
• sys-bio / simplesbml
  Python package for building SBML models without needing to use libSBML.
  ☆10Updated 3 years ago
• cellml / libcellml
  Repository for libCellML development.
  ☆17Updated 6 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆116Updated 2 months ago
• StochSS / StochKit
  StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
  ☆16Updated 4 years ago
• eladnoor / component-contribution
  Standard reaction Gibbs energy estimation for biochemical reactions
  ☆17Updated 6 years ago
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 3 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆14Updated 2 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆20Updated 3 weeks ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 4 years ago
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆61Updated this week