sbmlteam / moccasinLinks
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
☆12Updated last year
Alternatives and similar repositories for moccasin
Users that are interested in moccasin are comparing it to the libraries listed below
Sorting:
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Python utilities for SBML☆41Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Rule-based modeling framework☆65Updated 5 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 2 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆28Updated this week
- The official PySCeS project source code repository.☆39Updated last week
- ☆19Updated last week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 2 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆114Updated this week
- libRoadRunner: A high-performance SBML simulator☆53Updated 2 weeks ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆53Updated 2 weeks ago
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 months ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- A Python toolbox for COPASI☆13Updated last year
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Updated 10 months ago
- Modeling toolkit for biochemical simulation☆79Updated 9 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- High-performance sensitivity analysis for large ordinary differential equation models☆127Updated this week
- A simplified python interface to COPASI.☆24Updated 3 weeks ago
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated 2 years ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated 4 months ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 4 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 8 months ago
- a modeling environment tailored to parameter estimation in dynamical systems☆62Updated 3 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 6 years ago