MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
☆13Aug 21, 2024Updated 2 years ago
Alternatives and similar repositories for moccasin
Users that are interested in moccasin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago
- cy3sbml: SBML for Cytoscape 3☆16Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Sep 17, 2026Updated 3 weeks ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 6 months ago
- ☆23Sep 19, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python utilities for SBML☆42Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- A simplified python interface to COPASI.☆28Sep 14, 2026Updated 3 weeks ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Jul 14, 2026Updated 2 months ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆57Sep 21, 2026Updated 3 weeks ago
- Demos + resources for the #use-r group☆16Feb 5, 2025Updated last year
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 6 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simple single neuron simulations in Julia☆10May 31, 2019Updated 7 years ago
- MATLAB SimBiology-Based Platform for QSP Immune Oncology Models☆12Jan 8, 2021Updated 5 years ago
- Python package for working with PEtab files☆18Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆14May 16, 2023Updated 3 years ago
- MOOSE simulator.☆31Jan 28, 2022Updated 4 years ago
- libRoadRunner: A high-performance SBML simulator☆63Updated this week
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆28Dec 3, 2025Updated 10 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆144Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆130Updated this week
- Analysing and Modelling Leaf Gas Exchange Data in R☆18Oct 1, 2026Updated last week
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated 2 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Sep 29, 2026Updated 2 weeks ago
- Python wrapper around cvodes (from the sundials library)☆35Sep 1, 2026Updated last month
- Python solution for the application of machine learning to Pop PK model selection.☆32Sep 25, 2026Updated 2 weeks ago
- Python Environment for Modeling and Simulating Biological Systems☆146Aug 29, 2026Updated last month
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆43Oct 6, 2026Updated last week
- Rule-based modeling framework☆70Oct 2, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Oct 5, 2026Updated last week
- Python library for SBGN☆12Updated this week
- ☆19Dec 1, 2022Updated 3 years ago
- Import SBML dynamic models into the Julia SciML ecosystem for jump (Gillespie), SDE, and ODE simulations☆25Updated this week
- Julia for Systems Biology Workshop @JuliaCon 2024☆13Jul 8, 2024Updated 2 years ago
- The generic genome-scale metabolic model of Homo sapiens☆174Updated this week
- Anatomogram illustrating Expression Atlas experiments☆59Jul 30, 2020Updated 6 years ago