sbmlteam / moccasin
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
☆12Updated 7 months ago
Alternatives and similar repositories for moccasin:
Users that are interested in moccasin are comparing it to the libraries listed below
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 4 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆24Updated last year
- Python utilities for SBML☆40Updated last month
- cy3sbml: SBML for Cytoscape 3☆14Updated last week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- ☆18Updated this week
- libRoadRunner: A high-performance SBML simulator☆46Updated 2 weeks ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 3 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- A tool for creating Python implementations of SBML models.☆13Updated 2 years ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- The official PySCeS project source code repository.☆38Updated 3 months ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- Load mass spectrometry mzXML files☆17Updated 2 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆104Updated this week
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- Rule-based modeling framework☆61Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last month
- A simplified python interface to COPASI.☆20Updated last month
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated last month
- a modeling environment tailored to parameter estimation in dynamical systems☆59Updated this week
- Modeling toolkit for biochemical simulation☆74Updated 2 months ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Python Environment for Modeling and Simulating Biological Systems☆113Updated last month