Alternatives and similar repositories for moccasin

Users that are interested in moccasin are comparing it to the libraries listed below

• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 3 months ago
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆26Updated this week
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated 2 months ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 4 years ago
• sys-bio / antimony
  ☆18Updated last month
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆64Updated 2 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆51Updated 3 weeks ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆114Updated this week
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated last week
• sbmlteam / libsbml
  LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…
  ☆51Updated last month
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 5 months ago
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆29Updated 2 weeks ago
• Data2Dynamics / d2d
  a modeling environment tailored to parameter estimation in dynamical systems
  ☆60Updated 2 weeks ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated last month
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated this week
• CiaranWelsh / pycotools3
  A Python toolbox for COPASI
  ☆13Updated last year
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆38Updated last week
• copasi / basico
  A simplified python interface to COPASI.
  ☆22Updated last week
• AMICI-dev / AMICI
  High-performance sensitivity analysis for large ordinary differential equation models
  ☆124Updated last week
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last week
• SED-ML / KiSAO
  Ontology of algorithms for analyzing biological models, their parameters, and their outputs
  ☆11Updated 8 months ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆75Updated 6 months ago
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆41Updated last month
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• sys-bio / simplesbml
  Python package for building SBML models without needing to use libSBML.
  ☆10Updated 3 years ago
• yaml2sbml-dev / yaml2sbml
  Tool to convert an ODE model specified in the YAML format to SBML.
  ☆12Updated 2 years ago
• FDA / CiPA
  ☆33Updated last year
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆49Updated 8 months ago