Alternatives and similar repositories for cy3sbml:

Users that are interested in cy3sbml are comparing it to the libraries listed below

• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated last year
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆21Updated 2 months ago
• sys-bio / simplesbml
  Python package for building SBML models without needing to use libSBML.
  ☆10Updated 3 years ago
• tyo-nu / MINE-Database
  Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
  ☆19Updated 11 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆19Updated last year
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 8 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆18Updated 2 months ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆13Updated 2 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆23Updated last year
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆26Updated 2 years ago
• madeleineernst / pyMolNetEnhancer
  ☆20Updated last year
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆23Updated 10 months ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 2 weeks ago
• czbiohub-sf / Rapid-QC-MS
  Realtime quality control for mass spectrometry data acquisition
  ☆15Updated 2 months ago
• Edinburgh-Genome-Foundry / BandWitch
  💫 Computer-aided DNA assembly validation and identification from restriction digests.
  ☆15Updated 2 years ago
• ISA-tools / mzml2isa
  Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
  ☆12Updated 4 months ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆25Updated last month
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆19Updated 2 years ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆34Updated 3 months ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆11Updated 4 months ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 3 years ago
• alexandrovteam / curatr
  ☆14Updated 2 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆18Updated 4 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆34Updated last year
• bio-tools / biotoolsSchema
  biotoolsSchema : Tool description data model for computational tools in life sciences
  ☆37Updated 11 months ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated last year
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated 8 months ago