matthiaskoenig / cy3sbmlLinks
cy3sbml: SBML for Cytoscape 3
☆14Updated this week
Alternatives and similar repositories for cy3sbml
Users that are interested in cy3sbml are comparing it to the libraries listed below
Sorting:
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 9 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆25Updated last month
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 4 months ago
- ☆22Updated 4 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆21Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated last month
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated last year
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- biotoolsSchema : Tool description data model for computational tools in life sciences☆38Updated last year
- ☆24Updated 2 years ago
- IPython running in a docker container. This image can be used to integrate IPython into Galaxy☆17Updated 9 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 9 months ago
- Python utilities for SBML☆41Updated last month
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15Updated last week
- libRoadRunner: A high-performance SBML simulator☆49Updated last month
- A repository to practice contributing to a Manubot manuscript☆47Updated last week
- 🎨 Python library to plot multi-part genetic constructs☆25Updated last month
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆107Updated last week
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 2 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆19Updated last year