matthiaskoenig / cy3sbmlLinks
cy3sbml: SBML for Cytoscape 3
☆14Updated this week
Alternatives and similar repositories for cy3sbml
Users that are interested in cy3sbml are comparing it to the libraries listed below
Sorting:
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 weeks ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 2 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 2 months ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 4 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Repository of tutorials for The COBRA Toolbox☆23Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆114Updated this week
- biotoolsSchema : Tool description data model for computational tools in life sciences☆39Updated 2 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 9 months ago
- A repository to practice contributing to a Manubot manuscript☆47Updated 4 months ago
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 months ago
- libRoadRunner: A high-performance SBML simulator☆53Updated 2 weeks ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Updated 9 years ago
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Updated last year
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆53Updated last week
- The official PySCeS project source code repository.☆39Updated last week
- The BiGG Models website server☆84Updated 5 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated last year
- web based visualisation of molecular interaction data☆12Updated 5 months ago
- Visualization of fluorescent protein properties with d3.js. Obsolete.☆12Updated last year
- A tool for creating Python implementations of SBML models.☆15Updated 3 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- Python library for calling Cytoscape Automation via CyREST☆84Updated 2 months ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated 2 weeks ago