Alternatives and similar repositories for libsbgn:

Users that are interested in libsbgn are comparing it to the libraries listed below

• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 2 weeks ago
• sbgn / sbgn
  SBGN User Website and Developer Wiki (outdated version of the website)
  ☆12Updated last year
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆39Updated last month
• SBRG / bigg_models
  The BiGG Models website server
  ☆80Updated 5 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆18Updated 2 months ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆21Updated 2 months ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆43Updated 2 months ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆13Updated 2 years ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆101Updated this week
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆23Updated last year
• SynBioDex / SBOLDesigner
  SBOL Designer Project
  ☆31Updated 3 years ago
• bio-tools / biotoolsSchema
  biotoolsSchema : Tool description data model for computational tools in life sciences
  ☆37Updated 11 months ago
• edamontology / edamontology
  EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises c…
  ☆120Updated 2 weeks ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆99Updated this week
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 6 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• pubseq / bh20-seq-resource
  Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
  ☆13Updated 2 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 6 years ago
• elixir-europe / BioHackathon-projects-2020
  This repository is meant for the participants of the BioHackathon hosted in Barcelona in Nov 2020 to share ideas, create issues, manage p…
  ☆22Updated 2 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆47Updated last month
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated last year
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated 5 months ago
• GenomicsStandardsConsortium / mixs
  Minimum Information about any (X) Sequence” (MIxS) specification
  ☆40Updated this week
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 5 years ago
• ISA-tools / isa-api
  ISA tools API
  ☆42Updated 2 months ago
• borenstein-lab / CoMiDA
  The code and distributable for designing minimal microbial communities with specified metabolic functions.
  ☆11Updated 7 years ago