sbgn / libsbgn
Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
☆16Updated 6 months ago
Alternatives and similar repositories for libsbgn:
Users that are interested in libsbgn are comparing it to the libraries listed below
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 2 months ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆12Updated 2 years ago
- The BiGG Models website server☆82Updated 5 years ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…☆50Updated 9 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Python utilities for SBML☆41Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated last month
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- biotoolsSchema : Tool description data model for computational tools in life sciences☆37Updated last year
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆42Updated 2 weeks ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 7 months ago
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compo…☆47Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 5 months ago
- EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises c…☆122Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- The generic genome-scale metabolic model of Homo sapiens☆110Updated last month
- Python Environment for Modeling and Simulating Biological Systems☆114Updated 3 weeks ago
- SBOL Designer Project☆32Updated 3 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 7 years ago
- Curation and analysis of metabolic models☆34Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆54Updated last month
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 9 months ago
- ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…☆40Updated 2 years ago
- The PomBase community curation tool☆19Updated 2 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆105Updated 3 weeks ago
- Example usage of the Benchling API: https://docs.benchling.com/☆32Updated last year
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 4 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated last week