sbgn / libsbgnLinks
Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
☆16Updated 8 months ago
Alternatives and similar repositories for libsbgn
Users that are interested in libsbgn are comparing it to the libraries listed below
Sorting:
- Python utilities for SBML☆41Updated 3 weeks ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 4 months ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆12Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- libRoadRunner: A high-performance SBML simulator☆50Updated this week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- The BiGG Models website server☆83Updated 5 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 10 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆48Updated 7 months ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- The generic genome-scale metabolic model of Homo sapiens☆117Updated last month
- A simplified python interface to COPASI.☆20Updated last month
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 6 months ago
- The standard for open-source GEMs on GitHub☆19Updated last year
- Repository of tutorials for The COBRA Toolbox☆22Updated last week
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the …☆22Updated 2 weeks ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…☆50Updated last month
- A 3-Dimensional View of Human Metabolism and Disease☆28Updated 7 years ago
- Curation and analysis of metabolic models☆35Updated last year
- Python Environment for Modeling and Simulating Biological Systems☆118Updated 2 weeks ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆42Updated 2 weeks ago
- EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises c…☆123Updated last month
- Python package for building SBML models without needing to use libSBML.☆10Updated 3 years ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated 3 weeks ago
- Use ontology terms in your Python application☆19Updated 3 weeks ago