sys-bio / simplesbmlLinks
Python package for building SBML models without needing to use libSBML.
☆10Updated 3 years ago
Alternatives and similar repositories for simplesbml
Users that are interested in simplesbml are comparing it to the libraries listed below
Sorting:
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 9 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆25Updated last month
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- A tool for creating Python implementations of SBML models.☆14Updated 2 years ago
- Python utilities for SBML☆41Updated this week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 9 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Python package for working with PEtab files☆14Updated 3 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆107Updated this week
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 3 months ago
- libRoadRunner: A high-performance SBML simulator☆50Updated last month
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 4 months ago
- Python Environment for Modeling and Simulating Biological Systems☆116Updated 2 months ago
- A python toolbox for 13C metabolic flux analysis☆21Updated 9 months ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆49Updated this week
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated 3 weeks ago
- ☆24Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- The official PySCeS project source code repository.☆38Updated 3 weeks ago
- A Python toolbox for COPASI☆13Updated last year
- ☆22Updated 4 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- A simplified python interface to COPASI.☆20Updated 3 weeks ago
- Symbolic Kinetic Models with Python☆32Updated 2 months ago
- Repository of tutorials for The COBRA Toolbox☆22Updated last month