Python package for building SBML models without needing to use libSBML.
☆11Aug 18, 2021Updated 4 years ago
Alternatives and similar repositories for simplesbml
Users that are interested in simplesbml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Dec 3, 2025Updated 4 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated last month
- ☆23Aug 28, 2020Updated 5 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- High-performance sensitivity analysis for large ordinary differential equation models☆136Mar 31, 2026Updated last week
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 2 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆32Mar 31, 2026Updated last week
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 3 years ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆30Jun 21, 2022Updated 3 years ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 2 weeks ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Apr 1, 2026Updated last week
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- The BiGG Models website server☆89Nov 7, 2019Updated 6 years ago
- ☆19Updated this week
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- libRoadRunner: A high-performance SBML simulator☆57Mar 26, 2026Updated 2 weeks ago
- BRENDA parser in python☆22May 16, 2022Updated 3 years ago
- Python Environment for Modeling and Simulating Biological Systems☆136Dec 5, 2025Updated 4 months ago
- ☆10Jul 4, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 10 years ago
- TeX tables for pharmacometrics.☆11Mar 5, 2026Updated last month
- ☆13Jul 24, 2024Updated last year
- Repository for "The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applications"☆13May 30, 2025Updated 10 months ago
- Rcpp Example for accessing NLopt☆14Jan 27, 2026Updated 2 months ago
- R Interface to CVODE/CVODES/IDA functions in the SUNDIALS ODE solving C library☆11Updated this week
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Materials for workshop on GPU computation for statistics, data science, machine learning applications.☆14Sep 8, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Glossary of terms☆16Sep 5, 2024Updated last year
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Mar 31, 2026Updated last week
- DGCIT: Double Generative Adversarial Networks for Conditional Independence Testing☆11Nov 22, 2023Updated 2 years ago
- PyRex: A didactic polynomial-time regular expressions implementation in Python☆12Jul 29, 2014Updated 11 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 2 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week