Alternatives and similar repositories for simplesbml:

Users that are interested in simplesbml are comparing it to the libraries listed below

• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆13Updated 2 years ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆13Updated 2 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 3 months ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated 5 months ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆23Updated last year
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 2 weeks ago
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆10Updated 2 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆43Updated this week
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated last year
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆23Updated 11 months ago
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆19Updated 5 months ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆19Updated 3 months ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆40Updated 2 weeks ago
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 5 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆110Updated 2 weeks ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆104Updated this week
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated last year
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆11Updated last year
• jensenlab / gapsplit
  Efficient random sampling for COBRA models
  ☆13Updated 3 years ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• sbmlteam / libsbml
  LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…
  ☆45Updated this week
• SBRG / MASSpy
  ☆22Updated 2 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆20Updated this week
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆14Updated last month
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆61Updated 4 months ago