Alternatives and similar repositories for simplesbml

Users that are interested in simplesbml are comparing it to the libraries listed below

• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆15Updated 2 weeks ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆15Updated 3 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 3 weeks ago
• sbmlteam / libsbml
  LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…
  ☆54Updated 3 weeks ago
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆26Updated 2 months ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated 2 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆131Updated 2 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• whole-cell-tutors / wholecell
  COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model
  ☆10Updated 9 years ago
• StochSS / stochss
  StochSS - Software as a Service for modeling, simulation, inference and analysis of biochemical models. https://live.stochss.se
  ☆25Updated last week
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 8 months ago
• lifs-tools / goslin
  Goslin is the Grammar on succinct lipid nomenclature.
  ☆12Updated 2 months ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last month
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated 2 weeks ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆55Updated 3 weeks ago
• MoseleyBioinformaticsLab / mwtab
  The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…
  ☆12Updated 2 weeks ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆123Updated last week
• lifs-tools / awesome-lipidomics
  A collection of awesome lipidomics tools and resources
  ☆17Updated 3 years ago
• lotusnprod / lotus-processor
  ☆11Updated last week
• EBI-BioModels / SBO
  The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…
  ☆11Updated 2 years ago
• RECETOX / galaxytools
  Set of Galaxy tool wrappers developed at RECETOX
  ☆13Updated last week
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated last year
• libChEBI / libChEBIpy
  libChEBIpy: a Python API for accessing the ChEBI database
  ☆25Updated 5 months ago
• CiaranWelsh / pycotools3
  A Python toolbox for COPASI
  ☆13Updated last year
• yaml2sbml-dev / yaml2sbml
  Tool to convert an ODE model specified in the YAML format to SBML.
  ☆12Updated 2 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆36Updated 2 years ago
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆16Updated last week