Python package for building SBML models without needing to use libSBML.
☆11Aug 18, 2021Updated 5 years ago
Alternatives and similar repositories for simplesbml
Users that are interested in simplesbml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆28Dec 3, 2025Updated 9 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Updated this week
- ☆23Aug 28, 2020Updated 6 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- High-performance sensitivity analysis for large ordinary differential equation models☆144Sep 11, 2026Updated last week
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 5 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 7 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Sep 11, 2026Updated last week
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆32Jun 21, 2022Updated 4 years ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 5 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jun 17, 2026Updated 3 months ago
- ☆22Updated this week
- The BiGG Models website server☆92Nov 7, 2019Updated 6 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- libRoadRunner: A high-performance SBML simulator☆62Sep 5, 2026Updated 2 weeks ago
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated last month
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- ☆10Jul 4, 2019Updated 7 years ago
- Python Environment for Modeling and Simulating Biological Systems☆146Aug 29, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Glossary of terms☆15Sep 5, 2024Updated 2 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- ☆13Jul 24, 2024Updated 2 years ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 3 years ago
- Fostering open source collaboration with technical writers.☆10Aug 17, 2019Updated 7 years ago
- TeX tables for pharmacometrics.☆11Sep 11, 2026Updated last week
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Feb 29, 2016Updated 10 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆13May 16, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rcpp Example for accessing NLopt☆14Jul 4, 2026Updated 2 months ago
- R Interface to CVODE/CVODES/IDA functions in the SUNDIALS ODE solving C library☆11Aug 24, 2026Updated 3 weeks ago
- ☆11Feb 6, 2017Updated 9 years ago
- DGCIT: Double Generative Adversarial Networks for Conditional Independence Testing☆11Nov 22, 2023Updated 2 years ago
- Materials for workshop on GPU computation for statistics, data science, machine learning applications.☆14Sep 8, 2016Updated 10 years ago
- PyRex: A didactic polynomial-time regular expressions implementation in Python☆12Jul 29, 2014Updated 12 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆13Nov 28, 2023Updated 2 years ago