Alternatives and similar repositories for AGORA

Users that are interested in AGORA are comparing it to the libraries listed below

• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆104Updated 2 months ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆61Updated 3 months ago
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• biocore / songbird
  Vanilla regression methods for microbiome differential abundance analysis
  ☆59Updated 4 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 3 years ago
• signaturescience / metscale
  MetScale: snakemake workflows to scale metagenome analyses
  ☆19Updated 2 months ago
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated 4 months ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆42Updated last week
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆75Updated 4 months ago
• arpcard / amr_curation
  A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…
  ☆59Updated 7 months ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated last week
• thomasgurry / amplicon_sequencing_pipeline
  Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.
  ☆32Updated 2 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 7 months ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated last year
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆32Updated last week
• Chang-Yu-Chang / ecoprospector
  Python package simulating artificial selection on microbial communities
  ☆14Updated last year
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆138Updated 3 weeks ago
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆121Updated 2 years ago
• AuReMe / metage2metabo
  From annotated genomes to metabolic screening in large scale microbiotas
  ☆62Updated 2 months ago
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆123Updated 2 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆62Updated 6 months ago
• snayfach / MIDAS
  An integrated pipeline for estimating strain-level genomic variation from metagenomic data
  ☆128Updated last year
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆97Updated 2 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆77Updated 2 years ago
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆59Updated 5 years ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆30Updated 2 years ago
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆74Updated last year
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆174Updated 2 months ago
• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆86Updated last year
• pha4ge / hAMRonization
  Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
  ☆160Updated 2 months ago