Alternatives and similar repositories for AGORA:

Users that are interested in AGORA are comparing it to the libraries listed below

• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆39Updated last month
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆16Updated 3 weeks ago
• thomasgurry / amplicon_sequencing_pipeline
  Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.
  ☆31Updated last year
• kelwyres / Bactabolize
  ☆38Updated 2 months ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆58Updated 4 years ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 5 years ago
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆17Updated 2 years ago
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆33Updated 2 years ago
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆13Updated last year
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 10 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 2 months ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆33Updated 2 years ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆11Updated 4 months ago
• signaturescience / metscale
  MetScale: snakemake workflows to scale metagenome analyses
  ☆19Updated last month
• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆22Updated last year
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆97Updated 2 weeks ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆45Updated last month
• AuReMe / metage2metabo
  From annotated genomes to metabolic screening in large scale microbiotas
  ☆54Updated 5 months ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 10 months ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆55Updated last week
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆72Updated 4 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆30Updated 2 years ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated 4 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 4 years ago
• danielriosgarza / MAMBO
  ☆11Updated 5 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 4 years ago