VirtualMetabolicHuman / AGORA

Related projects ⓘ

Alternatives and complementary repositories for AGORA

• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆35Updated this week
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆17Updated 3 months ago
• thomasgurry / amplicon_sequencing_pipeline
  Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.
  ☆32Updated last year
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆94Updated last week
• kelwyres / Bactabolize
  ☆35Updated this week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated 7 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆52Updated 2 weeks ago
• jlw-ecoevo / gRodon
  ☆17Updated last year
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 5 years ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆58Updated 4 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆75Updated 8 months ago
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆17Updated 2 years ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆35Updated 7 months ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆30Updated last year
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆10Updated 3 weeks ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆53Updated 4 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 3 years ago
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆13Updated last year
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆15Updated 8 years ago
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆23Updated last month
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆56Updated 2 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆56Updated 3 weeks ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆79Updated 2 years ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated last month
• biocore / redbiom
  Sample search by metadata and features
  ☆45Updated last year
• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆44Updated last year
• rcolpo / pgp_reconstruction
  Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
  ☆11Updated 11 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆49Updated last year
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆69Updated this week