danielpodlesny / samestrLinks
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
☆23Updated 2 months ago
Alternatives and similar repositories for samestr
Users that are interested in samestr are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆43Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆33Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- IslandPath standalone software☆33Updated last year
- KEGG Module Evaluation Tool☆31Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated last week
- Prophage Activity Estimator☆27Updated last year
- ☆20Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- Discover and annotate the virome☆53Updated this week
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- whole genome MLST analysis☆48Updated 3 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- ☆53Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 6 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago