☆22Sep 19, 2025Updated 10 months ago
Alternatives and similar repositories for databinning
Users that are interested in databinning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆80Mar 10, 2024Updated 2 years ago
- ☆65Feb 27, 2024Updated 2 years ago
- The binning tool with dynamic contrastive learning and deep language model☆25Nov 14, 2025Updated 8 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last week
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- An algorithm for clustering metagenomic sequences.☆43Updated this week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆54Jul 10, 2026Updated last month
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Jul 29, 2026Updated last week
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Jun 1, 2026Updated 2 months ago
- ☆33Jul 16, 2023Updated 3 years ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆231Jul 22, 2026Updated 2 weeks ago
- ☆23Jan 6, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DAS Tool☆177May 2, 2024Updated 2 years ago
- AMBER: Assessment of Metagenome BinnERs☆33Jun 23, 2026Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Jan 11, 2024Updated 2 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆21Sep 2, 2025Updated 11 months ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆15Nov 20, 2025Updated 8 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Updated this week
- A metagenome assembler for the linked-reads with high-barcode specificity☆10Feb 27, 2026Updated 5 months ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 3 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆227May 9, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Horizontal gene transfer (HGT) identification pipeline☆70May 17, 2023Updated 3 years ago
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Updated this week
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 9 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆475Jul 28, 2023Updated 3 years ago
- More scalable dereplication for metagenome assembled genomes☆87Aug 3, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆15May 10, 2025Updated last year
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Jul 27, 2026Updated 2 weeks ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 9 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 4 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆110Feb 15, 2024Updated 2 years ago
- ☆21Feb 13, 2020Updated 6 years ago