KoslickiLab / YACHT-reproducibles
A repo to reproduce the experiments in the YACHT manuscript
☆11Updated last year
Alternatives and similar repositories for YACHT-reproducibles:
Users that are interested in YACHT-reproducibles are comparing it to the libraries listed below
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 11 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- scripts for microbiome analysis☆11Updated 6 months ago
- ☆15Updated 3 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 4 months ago
- http://huttenhower.sph.harvard.edu/waafle☆11Updated 2 months ago
- Dadaist2 🟨 Highway to R☆13Updated last month
- A functional profiler for metagenomes using FracMinHash☆15Updated last week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 6 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆14Updated 6 months ago
- ☆13Updated 11 months ago
- Metabolic scanning and annotation of Metagenomes☆10Updated 2 months ago
- Processing support for Greengenes2☆12Updated last year
- Genomewide Epistasis Analysis on Bacteria☆14Updated 5 months ago
- Population analysis PIPEline 🛠🧬☆16Updated this week
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆22Updated this week
- Microbial agile accurate SNP Typer☆29Updated last year
- ☆14Updated 3 months ago
- strain-level analysis tools☆34Updated 4 months ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 weeks ago