Alternatives and similar repositories for YACHT-reproducibles:

Users that are interested in YACHT-reproducibles are comparing it to the libraries listed below

• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆17Updated 6 months ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated 8 months ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆16Updated 2 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 9 months ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• quadram-institute-bioscience / dadaist2
  Dadaist2 🟨 Highway to R
  ☆13Updated last month
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆27Updated 3 years ago
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆14Updated 8 months ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• smangul1 / MiCoP
  MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
  ☆15Updated 3 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆34Updated 6 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 9 months ago
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago
• Sudaraka88 / LDWeaver
  Genomewide Epistasis Analysis on Bacteria
  ☆14Updated 7 months ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆19Updated 2 years ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated 10 months ago
• R-Wright-1 / kraken_metaphlan_comparison
  R markdown documents copied from other folders on Dec 15th 2021
  ☆14Updated 2 years ago
• PAiewsakun / GRAViTy
  ☆17Updated 2 years ago
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• SushiLab / mVIRs
  ☆13Updated last year
• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆20Updated 3 weeks ago
• amromics / panta
  Pan-genome Analysis
  ☆11Updated 2 weeks ago
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆19Updated last year
• raw-lab / DeGenPrime
  Primer design from single genes to whole gene families for unlocking the tree of life
  ☆14Updated last month
• NeLLi-team / gvclass
  ☆13Updated 3 weeks ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year