A repo to reproduce the experiments in the YACHT manuscript
☆12Nov 2, 2023Updated 3 years ago
Alternatives and similar repositories for YACHT-reproducibles
Users that are interested in YACHT-reproducibles are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infe…☆10Feb 18, 2025Updated last year
- ☆16Jun 2, 2021Updated 5 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 8 months ago
- ☆10Aug 18, 2024Updated 2 years ago
- ☆20Nov 11, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 7 months ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆24Mar 11, 2023Updated 3 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Oct 31, 2026Updated last week
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆13Sep 10, 2021Updated 5 years ago
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Feb 29, 2024Updated 2 years ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆29Feb 19, 2026Updated 8 months ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated 2 years ago
- Metagenome read simulation of multiple synthetic communities☆10Jan 6, 2024Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆29Mar 23, 2026Updated 7 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆28Nov 19, 2025Updated 11 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- ☆14Sep 17, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Metagenomic Binning Algorithm☆56Updated this week
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Sep 25, 2026Updated last month
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 7 years ago
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆33Sep 8, 2026Updated last month
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 3 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Welcome to CV-PCL Viewer! This software has simple image and video processing functions, as well as the ability to visualize point cloud …☆16Jul 20, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated last year
- ☆17May 22, 2023Updated 3 years ago
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆19Oct 8, 2026Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year