chrisquince / StrainMetaSimLinks
Strain resolved metagenome simulator
☆13Updated 7 years ago
Alternatives and similar repositories for StrainMetaSim
Users that are interested in StrainMetaSim are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆11Updated last year
- transposable element typing pipeline☆19Updated last year
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- Main development repository for SpreadGL☆19Updated last year
- De novo VIral Genome Annotator☆23Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- ☆15Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Quality control plotting for long reads☆10Updated last year
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- ☆26Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- ☆30Updated 2 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Strain Prediction and Analysis with Representative SEquence☆19Updated last year
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago