Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eukaryotic genomes from mixed prokaryotic-eukaryotic samples.
☆23Aug 20, 2026Updated last week
Alternatives and similar repositories for remag
Users that are interested in remag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 20, 2023Updated 3 years ago
- ☆17Updated this week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Jul 29, 2026Updated last month
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 7 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Aug 5, 2026Updated 3 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- ☆14Sep 2, 2021Updated 4 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- The binning tool with dynamic contrastive learning and deep language model☆25Aug 14, 2026Updated 2 weeks ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Jun 1, 2026Updated 2 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 9 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- ☆23Jan 6, 2026Updated 7 months ago
- Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…☆10Nov 6, 2025Updated 9 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆27Aug 4, 2026Updated 3 weeks ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 2 years ago
- ☆52May 29, 2026Updated 3 months ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Jun 22, 2026Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- Host prediction for phages☆29Nov 6, 2024Updated last year
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 3 weeks ago
- ☆83Aug 23, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Jul 14, 2026Updated last month
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Aug 7, 2026Updated 3 weeks ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago
- Predict AMPs in (meta)genomes and peptides☆96Jul 19, 2026Updated last month
- ☆12Mar 29, 2025Updated last year
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago